Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02531 ATGGTATGTGGCAGGTGTGTGAGGTCTATTTTTGTTCATGCTGGAACCTTCACCAAGAGACTGCAACTCAGCTGCGTTGGAAGGGCTTTGCAAACAGTTCCGCACATTACTTACTTTCCGAATCGCGTGTTTAAGGCAAACATAGGGATGATGGTTGATACAGGTTCTATGTCAAGGGCTGAAGCAGGACCTCTTGTGGATATGATGCCTCAGAAAGATGAGGATGGTGGTAGTGGTGGTGGTGGTGGTGGTTTTGCTAGTGGAGGGTGGAAGAGCGAAGATGAAAGAATTAGCTGTGGGTATTCAAGCTTCAGGGGGAAAAGAATGACCATGGAAGATTTTTATGATATTAAGACATCAATCATTGACGGTCATTCGGTATGCTTGTTTGGAATATTTGATGGTAAGAATTTCCAGCTTCATCACTTGCTTGGGAGAAAGATTATTCTTTCCTCTTCTCCAAGCAACACAAAGGAAAGTGAAGCAGGTCATGGTGGTTCTCGTGCTGCTGAATATTTGAAGGAGCATCTATTTAAAAATCTCATGAAGCATCCAAAGTTTTTGACAGATACCAAATTGGCTATAAGTGAAACATATCAGCAAACTGATGCTGACTTTCTGAATTCTGAAAAAGATACTTTCCGGGATGATGGTTCAACTGCTTCAACAGCAGTTTTGGTTGATAAGCATCTTTATGTTGCAAATGGACTTATTAAACTTGAGATTTCCTTTTTGACAGCAATTGCGCTATCTGAGGATCATAAGCCTAACAGAAGTGATGAGCGGAAGAGAATTGAGAATGCTGGGGGTGTTGTCATGTGGGCAGGTGACATGATTTTCAAGTATAGAAATTACTACATTAGATGGTTCTATTGTTGA 879 0.4118 MVCGRCVRSIFVHAGTFTKRLQLSCVGRALQTVPHITYFPNRVFKANIGMMVDTGSMSRAEAGPLVDMMPQKDEDGGSGGGGGGFASGGWKSEDERISCGYSSFRGKRMTMEDFYDIKTSIIDGHSVCLFGIFDGKNFQLHHLLGRKIILSSSPSNTKESEAGHGGSRAAEYLKEHLFKNLMKHPKFLTDTKLAISETYQQTDADFLNSEKDTFRDDGSTASTAVLVDKHLYVANGLIKLEISFLTAIALSEDHKPNRSDERKRIENAGGVVMWAGDMIFKYRNYYIRWFYC. 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02531 292 PANTHER PROTEIN PHOSPHATASE 86 275 IPR015655 GO:0004722|GO:0006470
Seca4g02531 292 CDD PP2Cc 97 273 IPR001932 -
Seca4g02531 292 MobiDBLite consensus disorder prediction 70 91 - -
Seca4g02531 292 Gene3D - 88 289 IPR036457 -
Seca4g02531 292 SUPERFAMILY PP2C-like 95 137 IPR036457 -
Seca4g02531 292 SMART PP2C_4 88 283 IPR001932 -
Seca4g02531 292 ProSiteProfiles PPM-type phosphatase domain profile. 98 292 IPR001932 -
Seca4g02531 292 Pfam Protein phosphatase 2C 162 274 IPR001932 -
Seca4g02531 292 SUPERFAMILY PP2C-like 163 274 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02531 Seca-Chr4 43545557 43549693 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02531 1 276 PP2C-type Phosphatase Gene Family AT5G53140 52.203 1.72e-85 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02531 K17506 - gmx:100805795 336.65