Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca4g02530 | ATGTCTCGTGCCTTTGGCAATCGTATGTTGAAGCCATTTGTGGTAGCAGAACCTGAGATCCAGGACCAGGAGATAAATGAAGAAACTGATCTGCTTGTTCTTGCAAGTGATGGACTCTGGGATGTAGTACCAAATGAGGATGCTGTTTCTCTTGCCCGCGCAGAGGAGGAGGCTGAGGCAGCTGCTCGTAAGTTAACAGAAGCTGCTTTTGCTCGTGGTAGTGCAGATAACATTACTTGCATTGTGGTGCGCTTCAATCATGAAAAAGCAGCATTCCCAGCTAATCCTGACAAGGCAGGTCCAGCTAGCAGTCAGCATGAATAG | 324 | 0.4784 | MSRAFGNRMLKPFVVAEPEIQDQEINEETDLLVLASDGLWDVVPNEDAVSLARAEEEAEAAARKLTEAAFARGSADNITCIVVRFNHEKAAFPANPDKAGPASSQHE. | 108 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca4g02530 | 107 | CDD | PP2Cc | 1 | 85 | IPR001932 | - | |
| Seca4g02530 | 107 | Coils | Coil | 51 | 71 | - | - | |
| Seca4g02530 | 107 | Pfam | Protein phosphatase 2C | 1 | 78 | IPR001932 | - | |
| Seca4g02530 | 107 | PANTHER | PROTEIN PHOSPHATASE | 1 | 85 | IPR015655 | GO:0004722|GO:0006470 | |
| Seca4g02530 | 107 | SUPERFAMILY | PP2C-like | 1 | 87 | IPR036457 | - | |
| Seca4g02530 | 107 | Gene3D | - | 1 | 91 | IPR036457 | - | |
| Seca4g02530 | 107 | ProSiteProfiles | PPM-type phosphatase domain profile. | 1 | 85 | IPR001932 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca4g02530 | Seca-Chr4 | 43541861 | 43544999 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca4g02530 | 1 | 93 | PP2C-type Phosphatase Gene Family | AT5G53140 | 79.570 | 3.35e-47 | 154 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca4g02530 | K17506 | - | gmx:100805795 | 158.303 |