Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02528 ATGATGGAGTGCAACAAAGATGAGGCAGTTAGGGCCAAAGAAATAGCAGAGAGGAAATTTTCAGAAAGGGAATATATTGGTGCAAAGAAATTTGCTCTCAAGGCTCTAAATCTGTATCCTGATTTGGAGGATCTTTCCCAGCTTTTGACAACAATTGATATCTACATCTCTGCTGAGAATAAAGTAAGTGGAGAAATGGATTGGTATGGTATACTTGGAGTGAGCCCCTTTGCTGATGAGGAGACAGTTAGAAAGCAGTACAGGAAGCTGGCTCTCTCCCTTCACCCTGACAAAAACAAGTCTTTGGGTGCAGAGGGTGCATTTAAGCTGGTTTCAGAAGCATGGAGTTTGCTATCAGATAAGACCAAGAGACTAGAATATAACCAGAAGAGGAGTTCAAAAGGTTTCCAACACAATACACCCCACCATGCTGGGTCTCAACCAGATGTGCCCGGTTCAAATGGTTTTTATAATTTTAAGAAGAATGTAACTTCAAATGTGAGAACTGGAAATAATAATGCTCGGGCACCTTCAACTTCAGTTCCTCCTCCTCATAAAAAGGCTGAAACCTTTTGGACTATATGTAATCGGTGCAGGACACATTATGAATATCTCAGGATTTATTTGAATCATACCCTTTTATGTCCCAACTGTAATGAAGCTTTTGTGGCTGTAGAGAGGGGTCCGCCTCCCAATGTTTTTAAGTCATCAAATTGGCCTTCCCATCAACGGCATCAGAATTCTCAACATCATGCTGGAAGTAATAATACAAACTTTCAGTGGGGTTCTCACTCCAAAATGGCTGGGTTTGGTAGCACGGATGGATCGCCATCTGTTTCTGCACAAGCTGCAAGTGTTGTGCAGCAGGCAAGTGAGAAAGTGAGGAGAGAGGGAACACTATCAATTGCTGAATGGGAGAGGAGTCAAATGTCTAAGAGGACTGAAGGTTCTTTTCATAAAGTTGAAAAACCTATGAAAAAGAGGAAGACAGAGGATATTCGCATGAATGGTTACCAAGGATATATGGCAAATCATATGGCTATGCGACATGGAGCAGCAGGTTTTGGCAATGTTTCTGAATCAGGAAAGCCTAACTTGGAAACAGAAAGGAAGTATGGTTTTTCAGGTCTTACTGGCCAGCATTACAGCACCAGAGAGTTGTCAATGTTTGAAGTACGAAACATGTTGATGGATAAGTCACGGTTGGAAATTCGTAAGAAACTTGAAGAATGGAGATTAATGGCTGAAGCTAAGATTATCAACAAGGACAAGGAGAATAAGAGACAGAAGAGCACATATAATGGCAAGACAACTGGTTCAGAGAAGTATGGAGATTCCACTGTTAATGGTAACAGGAATCTGGACATTGATTCCTTCCCTGTCGCATCTGATGACACTGTTAAGAATAGCCAAGCCTATGTTACAATCAATGTTCCAGACCCTGATTTTCACAATTTTGACTTGGATAGAGCTGAAAATTCCTTTGCGGAAGACCAAGTCTGGGCTGCTTATGATGATGATGACGGAATGCCTCGATATTATGCTAGAATTCACAAGGTGATCTCCATAAACCCATTTAGAATGCGTATCAGTTGGCTTAACTCTCGAAGCAACAGTGAATTGGGTCCAATTGATTGGGTAGGTTCTGGTTTTTATAAAACTTGTGGGGACTTCAGGACTGGCAAGCATGAAATAACTGAATCATTAAATTCATTTTCACACAAGGTTAGGTGGACAAAAGGCACCAGAGGAGTTGTTCGCATCTTCCCTGGTAAGGGGGAAGTCTGGGCTCTATATAGAAACTGGTCTCCTGATTGGAATGAACATACTCCAGATGAAGTGATACACAAGTATGATATGGTGGAGGTGCTTGATGATTTCAGTGAAGAGCAAGGTATATTAGTTACCCCACTTGTTAAAGTTGCTGGCTTTAGAACAGTGTTTCAAAGGCACATGGACCAAGATCAGGTTAGGAGGATTCCTAAAGAGGAGATGTTTCGATTCTCTCACCAGGTTCCTAATTACTTGCTTACTGGCCAAGAAGCTCATAATGCTCCAAAGGGTTGTCGTGAATTGGATCCAGCTGCTACTCCTTTAGATCTCCTTCAGATCTTAGCAGAAGCTAATGAGGCACCAGATAATGTTTAG 2148 0.4167 MMECNKDEAVRAKEIAERKFSEREYIGAKKFALKALNLYPDLEDLSQLLTTIDIYISAENKVSGEMDWYGILGVSPFADEETVRKQYRKLALSLHPDKNKSLGAEGAFKLVSEAWSLLSDKTKRLEYNQKRSSKGFQHNTPHHAGSQPDVPGSNGFYNFKKNVTSNVRTGNNNARAPSTSVPPPHKKAETFWTICNRCRTHYEYLRIYLNHTLLCPNCNEAFVAVERGPPPNVFKSSNWPSHQRHQNSQHHAGSNNTNFQWGSHSKMAGFGSTDGSPSVSAQAASVVQQASEKVRREGTLSIAEWERSQMSKRTEGSFHKVEKPMKKRKTEDIRMNGYQGYMANHMAMRHGAAGFGNVSESGKPNLETERKYGFSGLTGQHYSTRELSMFEVRNMLMDKSRLEIRKKLEEWRLMAEAKIINKDKENKRQKSTYNGKTTGSEKYGDSTVNGNRNLDIDSFPVASDDTVKNSQAYVTINVPDPDFHNFDLDRAENSFAEDQVWAAYDDDDGMPRYYARIHKVISINPFRMRISWLNSRSNSELGPIDWVGSGFYKTCGDFRTGKHEITESLNSFSHKVRWTKGTRGVVRIFPGKGEVWALYRNWSPDWNEHTPDEVIHKYDMVEVLDDFSEEQGILVTPLVKVAGFRTVFQRHMDQDQVRRIPKEEMFRFSHQVPNYLLTGQEAHNAPKGCRELDPAATPLDLLQILAEANEAPDNV. 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02528 715 MobiDBLite consensus disorder prediction 236 278 - -
Seca4g02528 715 MobiDBLite consensus disorder prediction 426 449 - -
Seca4g02528 715 Pfam DnaJ domain 67 128 IPR001623 -
Seca4g02528 715 MobiDBLite consensus disorder prediction 132 157 - -
Seca4g02528 715 Gene3D DnaJ domain 64 176 IPR036869 -
Seca4g02528 715 MobiDBLite consensus disorder prediction 432 449 - -
Seca4g02528 715 MobiDBLite consensus disorder prediction 130 157 - -
Seca4g02528 715 ProSitePatterns Nt-dnaJ domain signature. 108 127 IPR018253 -
Seca4g02528 715 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Seca4g02528 715 Pfam Domain of unknown function (DUF3444) 475 681 IPR024593 -
Seca4g02528 715 CDD DnaJ 67 120 IPR001623 -
Seca4g02528 715 SMART dnaj_3 66 123 IPR001623 -
Seca4g02528 715 SUPERFAMILY Chaperone J-domain 58 127 IPR036869 -
Seca4g02528 715 PRINTS DnaJ domain signature 103 123 IPR001623 -
Seca4g02528 715 PRINTS DnaJ domain signature 87 102 IPR001623 -
Seca4g02528 715 PRINTS DnaJ domain signature 69 87 IPR001623 -
Seca4g02528 715 PANTHER BNAC03G44070D PROTEIN 2 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02528 Seca-Chr4 43516763 43519519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02528 5 230 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.342 1.24e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02528 - - cam:101501612 1254.2