Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02527 ATGAACTATATGTTTCTTCTCCTTGTCACTTTCAAGATTATAAAGAAGAAGGTCGCAAAGGTACAAGAGATTATGGGGTTTCAAACATCACATAGCACTAAGCGGATAACACAGCCTGTTTTCAAAGCAAAGGAGGACTCAAGCGATGCTCATGAACGCTCTTTAATTCCAAGGGCACTTAACTTGACTGATCATATCCTAACCAATACCAAACCCATTCCCTCCTCAGGCTATGATTCATGGGTGGTAAGGCACCCTTCTGCACTGAACTCGTTTGATAGATTGATGAAAGCAGCCACTGGGAAGAGGATCGTCGTTTTTTTAGACTATGATGGTACCTTATCACCTATTGTAAATGACCCTGATCGCGCTTTCATGTCTGAGGAGATGCGTGCAGCAGTACGTGAAGTTGCTACTTATTTTCCAACGGCAATAATTAGTGGAAGAAGTAGAGATAAGGTAAAAGACTTCGTAAAGTTAGATAATTTATATTATGCTGGGAGCCATGGGATGGACATAATGGCACCATCAATGCCAGTTAGATCTTCTGACGGCAAGCATTTTGCCATTGCCCTTCAAACAAATGGCAACGAAGTTCCCTTTCAACCTGCGAAGAAGTTTTTGCCTGCAATTCGAGAGATATTAAGAGGTCTAGAGAATGGAGTAAAGGAGATACAAGGTGCAAAGGTAGAGGACAACGGATTCTGCATCTCTGTACATTTCCGGCATGTTCATGAAAAGGATTATAATGTTTTGGAAGAGAAAGTGAAGTCTGTGCTTGAAAAAAATCAGCAATTTTGCTTAACTGAGGGTAAAAAGGTTATGGAAATAAGGCCATCTATAGAATGGAACAAAGGTAATGCTGTAGAATATTTTCTTGACACATTAGGATTAAGCAGTTCCAGCAACATCCTTCCTGTGTATATTGGCGATGATAGAACTGATGAAGATGCTTTTAAGGCCATACAGAGTAGAGGGCAAGGTTATCCAATTATAGTGACTTCAGTTCCAAGAGAAACAAATGCTTTGTACTCTTTGCGTGACCCATCAGAAGTATTAGTCTTCTTGTCACGGCTGGCAAAATGGAGGAAAACCTCTTACTCAAGCAGGCCTTTAAATTTTGGTTAA 1128 0.4043 MNYMFLLLVTFKIIKKKVAKVQEIMGFQTSHSTKRITQPVFKAKEDSSDAHERSLIPRALNLTDHILTNTKPIPSSGYDSWVVRHPSALNSFDRLMKAATGKRIVVFLDYDGTLSPIVNDPDRAFMSEEMRAAVREVATYFPTAIISGRSRDKVKDFVKLDNLYYAGSHGMDIMAPSMPVRSSDGKHFAIALQTNGNEVPFQPAKKFLPAIREILRGLENGVKEIQGAKVEDNGFCISVHFRHVHEKDYNVLEEKVKSVLEKNQQFCLTEGKKVMEIRPSIEWNKGNAVEYFLDTLGLSSSSNILPVYIGDDRTDEDAFKAIQSRGQGYPIIVTSVPRETNALYSLRDPSEVLVFLSRLAKWRKTSYSSRPLNFG. 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02527 375 NCBIfam trehalose-phosphatase 101 361 IPR003337 GO:0003824|GO:0005992
Seca4g02527 375 SUPERFAMILY HAD-like 105 363 IPR036412 -
Seca4g02527 375 Gene3D - 104 193 IPR023214 -
Seca4g02527 375 Gene3D - 199 371 IPR023214 -
Seca4g02527 375 CDD HAD_TPP 105 352 - -
Seca4g02527 375 FunFam Trehalose 6-phosphate phosphatase 204 280 - -
Seca4g02527 375 FunFam Trehalose 6-phosphate phosphatase 104 190 - -
Seca4g02527 375 NCBIfam HAD-IIB family hydrolase 106 322 IPR006379 -
Seca4g02527 375 FunFam Trehalose 6-phosphate phosphatase 209 367 - -
Seca4g02527 375 Pfam Trehalose-phosphatase 107 350 IPR003337 GO:0003824|GO:0005992
Seca4g02527 375 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 34 368 IPR044651 GO:0004805|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02527 Seca-Chr4 43498221 43508075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02527 102 360 Trehalose Biosynthesis Gene Families AT4G17770 23.897 1.47e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02527 K01087 - gmx:100809194 605.905