Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02510 ATGGATAACATAGGGGATCCAAAGAGCCTCATCCATGAGTTACTAAAGGGTTTGGATTTGGCAAGGCAGTTACAAATCTATCTCCACGTGTCTTCTTCTTCTAAAGAAACCCGTGAGGTGCTGATTGAGAACATCATATCCTCATTTGAAAAGGCACTTGAAATGGTAAATTGGAAAGGTCCTGTTGGTGAGTCATCACAACAGCCCTCAGGGGTTGCAATTCGAATGTCAGACTCACCACCTTTGAGTAGTCCCCGAAGTGAAGACTCTGACAAAGATTTGAAGGATCAGGAACAGAATGCTTCTAGAAAGAGAAACATTTTGCCAAGATGGACAAAACAGATTCGAGTTACACCAGGAATGGGAGTGGAAGGGCCTCTTGATGATGGTTATAGTTGGAGAAAATATGGCCAGAAAGACATTCTTGGAGCCATGTATCCAAGAGGGTATTATAGATGCACCCACAGAAATGTTCAAGGCTGTTTGGCTACAAAGCAAGTGCAAAGATCTGATGAAGACTCAACTATCTTTGAAATCACATACCGTGGAAAGCACACCTGCACAGTGGCCTCCAATATGGTGGGTCCCACATCATCAAGTCCACGAGAAAACCAATTAGAATCAAATTCTCACAAACAGAATAAGAATGTCCTGCAAAGCCTTGAACAGCAGCAACAACAACCAAACGAATTACAACTTTTAAACCACCTGAGGGCAGGGCTGAGAGTCCAAACAGAGAACCTGGATTTCCATTTCACTCCTTCAACTTCCAACATCAAAATTGAAAACCAAATTCTCCCATCCCCTACTATGCTTGAAAACTTCACCTCTCCTTCTTATATATCCCCTGCTACATCAGGGATAAGCCACTTTTCTGTTTCTCCTCCAAGTGGGGTTACCGTTAACACTTCTGTTTCTGGCTCTCAAATCAATGACATCATCCCAACTGCTTCAGCTGCAAACTCTCCAACCGTTGGTTTAGAGTTTCCATTTGACCAGTTTGAATTTGACGGCCACAATTTCACATTCGATAACCCACGATTTTTCTCCTGA 1053 0.4283 MDNIGDPKSLIHELLKGLDLARQLQIYLHVSSSSKETREVLIENIISSFEKALEMVNWKGPVGESSQQPSGVAIRMSDSPPLSSPRSEDSDKDLKDQEQNASRKRNILPRWTKQIRVTPGMGVEGPLDDGYSWRKYGQKDILGAMYPRGYYRCTHRNVQGCLATKQVQRSDEDSTIFEITYRGKHTCTVASNMVGPTSSSPRENQLESNSHKQNKNVLQSLEQQQQQPNELQLLNHLRAGLRVQTENLDFHFTPSTSNIKIENQILPSPTMLENFTSPSYISPATSGISHFSVSPPSGVTVNTSVSGSQINDIIPTASAANSPTVGLEFPFDQFEFDGHNFTFDNPRFFS. 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02510 350 SUPERFAMILY WRKY DNA-binding domain 126 189 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g02510 350 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 258 IPR044810 GO:0003700
Seca4g02510 350 FunFam WRKY transcription factor 53 113 190 - -
Seca4g02510 350 Gene3D WRKY domain 120 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g02510 350 Pfam WRKY DNA -binding domain 128 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g02510 350 ProSiteProfiles WRKY domain profile. 122 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g02510 350 MobiDBLite consensus disorder prediction 191 214 - -
Seca4g02510 350 MobiDBLite consensus disorder prediction 60 109 - -
Seca4g02510 350 SMART WRKY_cls 127 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g02510 350 MobiDBLite consensus disorder prediction 85 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02510 Seca-Chr4 42881132 42883063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02510 8 249 WRKY Transcription Factor Family AT4G23810 38.290 4.78e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca4g02510 WRKY 1.8e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02510 - - gmx:100776906 464.536