Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02508 ATGGATGACAGTTTATCTGATATTTTTGAAGAGGGAGAATTCGGGAACAACCAATTTGGTGGAGACGACCTCTATGCCATTTTGGAAAGCCTACAAGACTTCACTGATTTTCCTCTCACTAACCAACTATCTGTTACGAACAACCACGACACCTCCAGAAAGTCAGCCTCTTCAAGTGCTCCACAACCACAAGATTCTGAAAATTATGAGCTTGGAATCTCACCCAAAACCAAAAGACAGAAGCTTACCCCAACTTCCTCAGAGGAGCCAAACCAAGATGGACAACAAAGGATTTCTCACATCACCGTTGAGAGAAACAGAAGAAAGCAAATGAATGAACACTTGACCGTCTTGAGGTCACTCATGCCTTGCTTTTATGTCAAAAGAGGAGATCAAGCATCGATAATTGGAGGTGTGGTTGATTACATCAGTGAGTTGCAGCTACTGCTTCAAGCCCTGGAAGCCAAGAAACAAAGAAAAGTGTACAGTGAAGTACTGAGCCCGAGGGTAGTTTCAAGCCCAAGGCCTTCACCACTTAGTCCTCGAAAACCACCACTGAGCCCTAGACTAAACTTGCCCATTAGCCCAAGGACTCCACAGCCAGGTAGCCCTTACAAGCCCAGGTACATTTCACCTCTTGAGCCATCTCCCACTTCTTCCGCATCCTCCTCTATCAACGATAATATCAATGAGCTTGTTGCCAATTCCAAGTCTCCTATTGCCGACGTGGAGGTCAAGTTTTCAGGCCCGCACGTGCTTTTGAAAACCGTTTCTCAACGGATTCCTGGACAAGCTCTCAAGATCATAACCGCACTTGAAGATCTCGCGCTTGAGATCCTCCATGTCAACATTAGCAGTACCGCGGATGATACCATGCTAAACTCATTCACTATCAAGATTGGAATTGAATGCCAACTCAGTGCGGAAGAACTCGCTCAACAAATCCAGCAAACATTCTGCTAA 963 0.4548 MDDSLSDIFEEGEFGNNQFGGDDLYAILESLQDFTDFPLTNQLSVTNNHDTSRKSASSSAPQPQDSENYELGISPKTKRQKLTPTSSEEPNQDGQQRISHITVERNRRKQMNEHLTVLRSLMPCFYVKRGDQASIIGGVVDYISELQLLLQALEAKKQRKVYSEVLSPRVVSSPRPSPLSPRKPPLSPRLNLPISPRTPQPGSPYKPRYISPLEPSPTSSASSSINDNINELVANSKSPIADVEVKFSGPHVLLKTVSQRIPGQALKIITALEDLALEILHVNISSTADDTMLNSFTIKIGIECQLSAEELAQQIQQTFC. 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02508 320 Gene3D - 86 161 IPR036638 GO:0046983
Seca4g02508 320 SMART finulus 101 152 IPR011598 GO:0046983
Seca4g02508 320 MobiDBLite consensus disorder prediction 45 98 - -
Seca4g02508 320 MobiDBLite consensus disorder prediction 174 211 - -
Seca4g02508 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 94 171 IPR036638 GO:0046983
Seca4g02508 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 95 146 IPR011598 GO:0046983
Seca4g02508 320 PANTHER TRANSCRIPTION FACTOR FAMA 4 319 IPR044283 GO:0003700|GO:0010052
Seca4g02508 320 MobiDBLite consensus disorder prediction 164 224 - -
Seca4g02508 320 FunFam Transcription factor SPEECHLESS 87 161 - -
Seca4g02508 320 Pfam Helix-loop-helix DNA-binding domain 96 147 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02508 Seca-Chr4 42841170 42848397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02508 1 300 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 51.412 1.45e-94 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g02508 HLH 1.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02508 K20558 - gmx:100777437 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02508 4 42841170 42848397 Seca4g02508 4 42841170 42848397 ECH