Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02504 ATGATGGAACAGAACCAGAGTAAGAGTATCCTATGCAAATACACTGTGCATCACAGCGTTACCAAGAAGCTGGTTTCACCCAAGAAACAGAGCAATCCCATAGAGCCCAGAGTGGTTCGGATATCACTCACTGACCCTGACGCCACCGACTCCTCCAGCGACGAAGAAGGAGAGCGCTTCGTTCGCCGCAGAACGAAGCGCTATGTCAACCAGATTGAAATCGAAACGACAACCAAAAACGTCGCCGTTCAGAACCCGAGAAAGAGGCCCGCCGGAGAAACCGCTTCAATCCGGCGGCCGGCGAAGGTTTCTGCCGCCTCCAACAATGGAAGAAAGTTCCGCGGCGTTAGGCAGAGACCTTGGGGGAAATGGGCGGCGGAGATTCGAGATCCTGCAAGGAGGGTGAGGCTCTGGTTAGGTACCTACGACACTGCAGAAGAAGCAGCTATGGTGTACGACAATGCCGCGATTAGGCTTCGAGGACCTGATGCTTTGACCAACTTCGTCACACCGCCGCAGAAGGAAACACCGCCGCCGGAGGCCGTGAAACCAGAAATGAAGGTCGTCGTGGAGGAAGAAGCCTCCGGTTCCGGTTACGATTCCGGCGATGATCAGTGTCTGAACCTTTCATCTCCCACTTCGGTGCTCCAATTCCGAAGCAACTCGAGCGAGTCACAAAAACCGGTCGAACCGGAGGAAGCGTACGAACCGGAGGTAGTGTCAGAGGTTTTCAGAGAGTGCCAAGGAGAGACGAGTTTGTTCGATGAGAGTGGGCAGTTTTTCCAGCTGGATAATATGGATATGGACATGGCTGTTTGGGATGATGTGTTCAATTTCCAAACCCCAGAGTACCCTATGCTTTTTGAAGAAGAACGACCACAAATGTTCGACGAAACGACGCCGTTTTCCTCAGAGGAAGATTTCATTGACAGCATTGTCCTTGCTGATTCTCTCATCGATTTTGATAAAGCCTGTCCTTCTCCCTCCTCCTCTTCTAATTCCTTGTGCCAAGTGGACGATTACTTTCAAGATATATTGTTAGGCTCAGATCCTCTCGTGGTTCTCTGA 1068 0.515 MMEQNQSKSILCKYTVHHSVTKKLVSPKKQSNPIEPRVVRISLTDPDATDSSSDEEGERFVRRRTKRYVNQIEIETTTKNVAVQNPRKRPAGETASIRRPAKVSAASNNGRKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAMVYDNAAIRLRGPDALTNFVTPPQKETPPPEAVKPEMKVVVEEEASGSGYDSGDDQCLNLSSPTSVLQFRSNSSESQKPVEPEEAYEPEVVSEVFRECQGETSLFDESGQFFQLDNMDMDMAVWDDVFNFQTPEYPMLFEEERPQMFDETTPFSSEEDFIDSIVLADSLIDFDKACPSPSSSSNSLCQVDDYFQDILLGSDPLVVL. 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02504 355 ProSiteProfiles AP2/ERF domain profile. 112 169 IPR001471 GO:0003700|GO:0006355
Seca4g02504 355 MobiDBLite consensus disorder prediction 87 108 - -
Seca4g02504 355 MobiDBLite consensus disorder prediction 23 60 - -
Seca4g02504 355 Pfam AP2 domain 112 161 IPR001471 GO:0003700|GO:0006355
Seca4g02504 355 SUPERFAMILY DNA-binding domain 112 169 IPR016177 GO:0003677
Seca4g02504 355 CDD AP2 112 168 IPR001471 GO:0003700|GO:0006355
Seca4g02504 355 Gene3D AP2/ERF domain 111 170 IPR036955 GO:0003700|GO:0006355
Seca4g02504 355 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Seca4g02504 355 PRINTS Ethylene responsive element binding protein signature 135 151 IPR001471 GO:0003700|GO:0006355
Seca4g02504 355 MobiDBLite consensus disorder prediction 217 236 - -
Seca4g02504 355 SMART rav1_2 112 175 IPR001471 GO:0003700|GO:0006355
Seca4g02504 355 FunFam Ethylene-responsive transcription factor 2 111 170 - -
Seca4g02504 355 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 36 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02504 Seca-Chr4 42785226 42786293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02504 12 317 AP2-EREBP Transcription Factor Family AT4G27950 41.358 1.77e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca4g02504 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02504 - - gmx:100807598 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02504 4 42785226 42786293 Seca4g02504 4 42785226 42786293 ECH