Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02500 ATGGAAAAGAAGTTGGTCCTCTTGTTCATTTTTTCAGTGTTGGTTAGTGTTGAAGCTGAACCAGTGGAAGATAAACAAGCTTTGCTTGATTTCCTTCACAACATGAGTCATTCTCCTCATGTCAATTGGGATGAGAACTCTTCTGTTTGTCAAAGCTGGAGAGGAGTGACCTGCAACTCTGATCAATCTCGAGTTATAGCTCTACGATTGCCTGGAGCTGGGTTGAGTGGACCAATCCCTCCCAACACTCTTAGTCGTCTCTCAGCACTTGAGATTGTGAGTCTTAGATCAAATGGTATAACTGGTCTTTTCCCTGATGGTTTCTCTGAGCTGAAAAATTTGACTGCTCTCCATCTCCAATTTAACAAGTTTTCTGGTCCATTGCCATTGGATTTTTCTGTTTGGAATAATCTTACTGTTGTTAATTTATCCAATAATTCTTTTAATGGGAGCATCCCTTCTTCAATTTCAAATCTGACTCATCTTACTTCATTAGTCCTTGCCAACAACTCCCTTTCGGGTGAGATTCCTGATCTTAATATTCCTAGCCTGCAAGAGCTAAATTTAGCCAACAATAACCTTAGTGGGGTTGTGCCTAAATCACTCCTTAGATTTCCAAGTTGGGCCTTTTCTGGTAACAATTTTACATCAGAAAATGCACTTCCTCCAGCTTTTCCTATGCAACCACCGGATGTTCAGCCAACAAAGAAACACAAAGGACTCAGTGAAACTGCATTATTGGGTATCATCATTGGTGTTTGTGTGTTGGTATTTGCTGTGATTGGAGGTGTCATGATTATCTGCTGCTATGAGAATGCAGATGTAGACATGGAACAAGTGAAATCCCAGAAAAAAGAAGTCTCTCTGAAAACAGAATCTTCTGCAAGTAAAGACAAACACAAAATTGTCTTCTTTGAAGGTTGCAATCTTGCATTTGATCTAGAGGACCTATTGAGAGCGTCTGCTGAGATTCTTGGAAAGGGTACCTTTGGTACAACATATAAGGCTGCTCTAGAGGATGCAACCACTGTGGCGGTGAAGAGGTTGAAGGAGGTCACAGTTGGGAAACGAGACTTTGAACAGCAGATGGAGTTGGTGGGGAAAATTAAGCATGAAAATGTGGATGGATTAAGAGCATACTACTATTCAAAGGAGGAGAAACTTATAGTATTTGATTACTATCCACAAAGCAGCGTTTCTGCTATGTTACATGGCAAAAGAGGAGAAGGTAGGACTTCTTTAGACTGGGATAGCCGTTTGAGGATTGCAATTGGTGCAGCAAGAGGCATTGCTCACATCCATGCTCAAAATGGAGGGAAACTCGTTCATGGAAACATAAAAGCCTCAAACATCTTCCTCAACTCACATGGATATGGTTGTGTATCTGATATAGGCTTGGCAACATTGATGAGTCCAATACCCTCACCAGGCACAAGGGCAGCAGGATACCGTGCCCCAGAAGTAACAGACACTCGTAAAGCAACCCACGCATCTGATGTCTACAGTTTTGGGGTCCTGTTACTTGAGCTTCTAACTGGGAAATCCCCCATATATGCCACAGAAGGTGAGCAAGTTGTCCACTTGGTTAGATGGGTGAATTCTGTGGTTAGAGAGGAGTGGACTGCAGAAGTGTTTGATGTAGAGCTGTTGAGGTATCCAAATATTGAGGAAGAAATGGTAGAGATGCTACAAATAGGGATGGCTTGTGCAACAAGAATGCCAGATCAGAGACCAAAAATGCCACAAGTGGTGAGAATGATGGACGGAATTCGTCGTGTAAATACTGGAAATCCATCATCTACTGAGTCTAGATCAGAAGTTTCTACCCCAACTATTAATGCAACTGAGATACCTTCTACCTCTGCTCCACACTAA 1875 0.4208 MEKKLVLLFIFSVLVSVEAEPVEDKQALLDFLHNMSHSPHVNWDENSSVCQSWRGVTCNSDQSRVIALRLPGAGLSGPIPPNTLSRLSALEIVSLRSNGITGLFPDGFSELKNLTALHLQFNKFSGPLPLDFSVWNNLTVVNLSNNSFNGSIPSSISNLTHLTSLVLANNSLSGEIPDLNIPSLQELNLANNNLSGVVPKSLLRFPSWAFSGNNFTSENALPPAFPMQPPDVQPTKKHKGLSETALLGIIIGVCVLVFAVIGGVMIICCYENADVDMEQVKSQKKEVSLKTESSASKDKHKIVFFEGCNLAFDLEDLLRASAEILGKGTFGTTYKAALEDATTVAVKRLKEVTVGKRDFEQQMELVGKIKHENVDGLRAYYYSKEEKLIVFDYYPQSSVSAMLHGKRGEGRTSLDWDSRLRIAIGAARGIAHIHAQNGGKLVHGNIKASNIFLNSHGYGCVSDIGLATLMSPIPSPGTRAAGYRAPEVTDTRKATHASDVYSFGVLLLELLTGKSPIYATEGEQVVHLVRWVNSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIGMACATRMPDQRPKMPQVVRMMDGIRRVNTGNPSSTESRSEVSTPTINATEIPSTSAPH. 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02500 624 SUPERFAMILY Protein kinase-like (PK-like) 323 587 IPR011009 -
Seca4g02500 624 Pfam Leucine Rich Repeat 183 210 IPR001611 GO:0005515
Seca4g02500 624 Pfam Leucine Rich Repeat 137 159 IPR001611 GO:0005515
Seca4g02500 624 MobiDBLite consensus disorder prediction 589 624 - -
Seca4g02500 624 ProSiteProfiles Protein kinase domain profile. 319 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02500 624 Pfam Leucine rich repeat 79 124 IPR001611 GO:0005515
Seca4g02500 624 FunFam pollen receptor-like kinase 1 288 393 - -
Seca4g02500 624 SUPERFAMILY L domain-like 36 208 - -
Seca4g02500 624 Gene3D Transferase(Phosphotransferase) domain 1 395 612 - -
Seca4g02500 624 Pfam Leucine rich repeat N-terminal domain 23 59 IPR013210 -
Seca4g02500 624 ProSitePatterns Protein kinases ATP-binding region signature. 325 356 IPR017441 GO:0005524
Seca4g02500 624 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 394 601 - -
Seca4g02500 624 FunFam Probable inactive receptor kinase RLK902 21 180 - -
Seca4g02500 624 ProSiteProfiles Leucine-rich repeat profile. 183 204 IPR001611 GO:0005515
Seca4g02500 624 Gene3D Phosphorylase Kinase; domain 1 283 393 - -
Seca4g02500 624 PANTHER OS05G0588300 PROTEIN 7 599 - -
Seca4g02500 624 MobiDBLite consensus disorder prediction 593 624 - -
Seca4g02500 624 Pfam Protein tyrosine and serine/threonine kinase 323 586 IPR001245 GO:0004672|GO:0006468
Seca4g02500 624 Gene3D Ribonuclease Inhibitor 22 230 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02500 Seca-Chr4 42693642 42697845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02500 13 611 Receptor kinase-like Gene Family AT4G23740 58.039 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca4g02500 PK_Tyr_Ser-Thr 5.7e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02500 - - gmx:100813065 1003.82