Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca4g02491 | ATGTCAAGCAATGCATTAACTCTTTTTATCTTGTATCTTAATATCTCCTTGTTTCCAGCCATCTATGCTCTGAACCAGGAAGGTCTCTCTCTACTTTCATGGCTTTCAACCTTCAATTCCTCCAACTCTGCTACTGCCTTCTCTTCATGGGATCCAACCCACCAAAATCCTTGCAGATGGGATTATATAAAATGTTCCAAAGAAGGGTTTGTTGCAGAGATCATAATAACATCCATTGATCTTCGTAGCAGCTTCCCTACACAGTTCCTTTCTTTTAGCAATCTTACCACTCTTGTCATCTCAAATGGAAATCTCACTGGTGAGATTCCAAGTTCTGTGGGAAACTTGTCCTCTCTGGTCACTCTGGACCTTAGCTACAACACTTTATCAGGAACAATTCCAGAAGAAATAGGAAAGCTATCTAAACTGCAGTGGTTAGCATTGAATTCAAATTCCTTACATGGTGGAATTCCAACCACAATTGGAAACTGCTCAAGGCTTCAGCAGCTGGCACTGTTTGACAACCAGCTTTCTGGTATGATTCCTGGAGAAATAGGCCAGTTGAAGGCTCTTGAATCTCTAAGAGCAGGTGGAAATCCAGGGATTCATGGTGAAATTCCAATGCAAATATCAGATTGCAAGGCTCTGGTTTATCTAGGACTTGCAGTTACAGGGATATCTGGGGAGATTCCACCAGCTATAGGAGAACTTACAAATCTCAAGACACTTTCAGTCTACACAGCACATCTCACAGGTAACATCCCACCAGAGATTCAAAACTGCTCATCCTTGGAAGATTTGTTTCTGTATGAAAACCAACTTTCTGGAAATATTCCTGATGAATTGGGTTACATGCAAAGCCTCAGGAGGGTGTTGCTGTGGCAGAACAATTTGACTGGCACCATTCCAGAAAGTCTGGGAAACTGCACAAATCTGAAGGTTATAGATTTCTCTTTGAATTCTCTGGGTGGTCAGTTACCTGTGACTCTCAGCAATCTACTGTCATTGGAGGAATTTCTTTTGTCTGATAATAACATTTATGGAGAAATACCTTCCTATATTGGCAATTTTTCCAGGCTGAAACAACTTGAATTGGATAACAACAAATTCTCTGGTGAGATTCCACCTGTTATGGGGCAACTGAAGGAACTTACCCTCTTCTTTGCCTGGCAGAATCAACTCCATGGAAGTATACCAACAGAGCTATCCAACTGTGAAAAACTTGAAGCAATTGATCTTTCACACAATTTCCTCACTGGTCCAATTCCAAATTCACTCTTTCATCTAAAAAATTTAACTCAGTTGTTGCTGATATCAAACAGACTTTCTGGGCAAATTCCACCAGATATTGGCAGTTGCACCAGCTTGATCAGGTTACGGCTGGGATCAAACAACTTTACAGGTCAACTTCCACCAGAAATAGGTCTTTTAAGCAGTTTGAGCTTTCTTGAGTTGTCAGATAATCTACTCAGTGGAGATATTCCCTTTGAGATAGGTAACTGTGCTCATCTAGAAATGCTTGACTTGCACAGCAATGAGCTGCAAGGGACCATTCCTTCCTCATTAAAATTCCTAGTTGGTCTTAATGTCTTGGATCTTTCTGCAAACAGAATAACTGGAAGCCTTCCTGAGAATTTGGGCAAGCTTACATCTTTAAATAAGCTGATTCTAAGTGGAAACTTCATCACTGGTTTGATCCCTAAGTCACTAGGCCTTTGTAAGGATTTGCAGTTGCTGGATTTAAGTAACAATAGGATCACAGGTTCCATTCCGGATGAGATTGGTCAGTTGCAAGGATTAGATATCCTCTTGAACTTGAGTTGGAATTCTCTTACTGGCCCCATTCCAGAGACCTTCTCAAATCTCTCAAAACTCTCTATCTTGGATCTCTCTCACAATAAGCTCACAGGTACCCTCAGAGTACTGGGTAGTCTTGACAATCTTGTGTCTCTAAATGTCTCCTATAATTGCTTTTCTGGTTCTCTTCCTGATACAAAGTTCTTCCGGGATCTACCTCCTGCTGCATTTGCTGGTAACCCTGAGCTTTGCATTAACAAGTGTCATGCAAGTGAGAATCGCCAAGGCATCAAGTCAATAAGAAATATTATTATCTACACTTTCCTTGGGGTTATTTTAACTTCTATTTTTGTCACTTGTGGAGTGATTTTAGCTCTCAGGATTCAAGGCGACAGTTGTGGGAGGAATTTTGATGAAGGTGGTGACATGGAATGGGCTTTCACTCCATTCCAAAAGCTCAATTTCTCCATCAATGACATTGTCACAAAGTTGTCAGATTCAAACATTGTTGGAAAGGGTTGCTCAGGAGTTGTTTATCGTGTAGAGACTCCAATGAAACAGGTTATTGCAGTGAAGAAGCTATGGCCAATAAAGAAGGAAGAGCCACCAGAGAGAGATCTATTTACTGCAGAAGTTCAGACCCTTGGATCAATAAGGCATAAAAATATAGTGAGACTTTTAGGATGCTGCAACAATGGAAGAACTAGATTGCTCTTGTTTGATTACATTTGTAATGGGAGTTTATTTGGATTACTCCATGAAAAGAGGTTGTTCTTGGAATGGGATGCAAGGTATAAGATCATACTAGGAGCAGCTCATGGTTTAGAATATCTTCATCATGATTGTATCCCTCCAATTGTCCATAGGGACATTAAGGCTAACAACATCTTGGTAGGTCCACAATTTGAAGCTTTTCTTGCAGATTTTGGCCTTGCAAAACTAGTGAGTTCTTCAGAGTGTTCAGGAGCTTCTAATATAGTTGCAGGTTCTTACGGTTACATAGCTCCAGAATATGGATACAGTTTAAGGATCACAGAAAAGAGTGATGTGTACAGTTATGGTGTTGTGCTTCTTGAGGTCTTAACGGGGATGGAGCCAACAGATAACAGGATTCCAGAGGGTGCTCACATTGTCACTTGGGTTACCAGTGAAATCAGAGAGAAAAAAAGAGAATTTACATCTATCCTTGACCAACAACTAGTATTGCAATGTGGAACAAGAACCCCAGAGATGCTTCAAGTGCTAGGGGTGGCTCTCCTCTGTGTGAATCCATCCCCAGAAGAACGGCCTACAATGAAAGATGTAACAGCAATGCTCAAGGAGATCAGGCATGAAAATGATGATTTTGAGAAACCAAATTTTCTCCATAAAGGCATGGTTACCAATCCAAAAGCAGCAGTTCACTGTTCTAGTTTCTCTAGATCATGTGAACCTTTGATAGAATCATCATCCTCTTCTTCATAA | 3261 | 0.4066 | MSSNALTLFILYLNISLFPAIYALNQEGLSLLSWLSTFNSSNSATAFSSWDPTHQNPCRWDYIKCSKEGFVAEIIITSIDLRSSFPTQFLSFSNLTTLVISNGNLTGEIPSSVGNLSSLVTLDLSYNTLSGTIPEEIGKLSKLQWLALNSNSLHGGIPTTIGNCSRLQQLALFDNQLSGMIPGEIGQLKALESLRAGGNPGIHGEIPMQISDCKALVYLGLAVTGISGEIPPAIGELTNLKTLSVYTAHLTGNIPPEIQNCSSLEDLFLYENQLSGNIPDELGYMQSLRRVLLWQNNLTGTIPESLGNCTNLKVIDFSLNSLGGQLPVTLSNLLSLEEFLLSDNNIYGEIPSYIGNFSRLKQLELDNNKFSGEIPPVMGQLKELTLFFAWQNQLHGSIPTELSNCEKLEAIDLSHNFLTGPIPNSLFHLKNLTQLLLISNRLSGQIPPDIGSCTSLIRLRLGSNNFTGQLPPEIGLLSSLSFLELSDNLLSGDIPFEIGNCAHLEMLDLHSNELQGTIPSSLKFLVGLNVLDLSANRITGSLPENLGKLTSLNKLILSGNFITGLIPKSLGLCKDLQLLDLSNNRITGSIPDEIGQLQGLDILLNLSWNSLTGPIPETFSNLSKLSILDLSHNKLTGTLRVLGSLDNLVSLNVSYNCFSGSLPDTKFFRDLPPAAFAGNPELCINKCHASENRQGIKSIRNIIIYTFLGVILTSIFVTCGVILALRIQGDSCGRNFDEGGDMEWAFTPFQKLNFSINDIVTKLSDSNIVGKGCSGVVYRVETPMKQVIAVKKLWPIKKEEPPERDLFTAEVQTLGSIRHKNIVRLLGCCNNGRTRLLLFDYICNGSLFGLLHEKRLFLEWDARYKIILGAAHGLEYLHHDCIPPIVHRDIKANNILVGPQFEAFLADFGLAKLVSSSECSGASNIVAGSYGYIAPEYGYSLRITEKSDVYSYGVVLLEVLTGMEPTDNRIPEGAHIVTWVTSEIREKKREFTSILDQQLVLQCGTRTPEMLQVLGVALLCVNPSPEERPTMKDVTAMLKEIRHENDDFEKPNFLHKGMVTNPKAAVHCSSFSRSCEPLIESSSSSS. | 1087 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca4g02491 | 1086 | ProSiteProfiles | Leucine-rich repeat profile. | 575 | 597 | IPR001611 | GO:0005515 | |
Seca4g02491 | 1086 | ProSiteProfiles | Protein kinase domain profile. | 763 | 1046 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca4g02491 | 1086 | Pfam | Leucine rich repeat | 604 | 656 | IPR001611 | GO:0005515 | |
Seca4g02491 | 1086 | Pfam | Leucine rich repeat | 93 | 153 | IPR001611 | GO:0005515 | |
Seca4g02491 | 1086 | Pfam | Leucine rich repeat | 503 | 560 | IPR001611 | GO:0005515 | |
Seca4g02491 | 1086 | SUPERFAMILY | Protein kinase-like (PK-like) | 750 | 1047 | IPR011009 | - | |
Seca4g02491 | 1086 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED | 527 | 1038 | - | - | |
Seca4g02491 | 1086 | Gene3D | Ribonuclease Inhibitor | 325 | 423 | IPR032675 | - | |
Seca4g02491 | 1086 | Gene3D | Ribonuclease Inhibitor | 221 | 324 | IPR032675 | - | |
Seca4g02491 | 1086 | FunFam | LRR receptor-like serine/threonine-protein kinase RCH1 | 842 | 1056 | - | - | |
Seca4g02491 | 1086 | SUPERFAMILY | RNI-like | 326 | 663 | - | - | |
Seca4g02491 | 1086 | FunFam | LRR receptor-like serine/threonine-protein kinase RCH1 | 24 | 199 | - | - | |
Seca4g02491 | 1086 | FunFam | LRR receptor-like serine/threonine-protein kinase RCH1 | 739 | 841 | - | - | |
Seca4g02491 | 1086 | Pfam | Leucine Rich Repeat | 407 | 429 | IPR001611 | GO:0005515 | |
Seca4g02491 | 1086 | Pfam | Protein kinase domain | 766 | 1035 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca4g02491 | 1086 | Gene3D | Ribonuclease Inhibitor | 424 | 695 | IPR032675 | - | |
Seca4g02491 | 1086 | FunFam | LRR receptor-like serine/threonine-protein kinase RCH1 | 407 | 691 | - | - | |
Seca4g02491 | 1086 | Gene3D | Transferase(Phosphotransferase) domain 1 | 842 | 1058 | - | - | |
Seca4g02491 | 1086 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 885 | 897 | IPR008271 | GO:0004672|GO:0006468 | |
Seca4g02491 | 1086 | Gene3D | Phosphorylase Kinase; domain 1 | 741 | 841 | - | - | |
Seca4g02491 | 1086 | ProSitePatterns | Protein kinases ATP-binding region signature. | 769 | 797 | IPR017441 | GO:0005524 | |
Seca4g02491 | 1086 | SMART | LRR_typ_2 | 285 | 309 | IPR003591 | - | |
Seca4g02491 | 1086 | SMART | LRR_typ_2 | 525 | 548 | IPR003591 | - | |
Seca4g02491 | 1086 | SMART | LRR_typ_2 | 573 | 597 | IPR003591 | - | |
Seca4g02491 | 1086 | SMART | LRR_typ_2 | 429 | 453 | IPR003591 | - | |
Seca4g02491 | 1086 | SMART | LRR_typ_2 | 622 | 644 | IPR003591 | - | |
Seca4g02491 | 1086 | SMART | LRR_typ_2 | 116 | 140 | IPR003591 | - | |
Seca4g02491 | 1086 | SMART | LRR_typ_2 | 645 | 678 | IPR003591 | - | |
Seca4g02491 | 1086 | SMART | LRR_typ_2 | 477 | 501 | IPR003591 | - | |
Seca4g02491 | 1086 | SMART | LRR_typ_2 | 333 | 357 | IPR003591 | - | |
Seca4g02491 | 1086 | SMART | LRR_typ_2 | 549 | 572 | IPR003591 | - | |
Seca4g02491 | 1086 | PRINTS | Leucine-rich repeat signature | 622 | 635 | - | - | |
Seca4g02491 | 1086 | PRINTS | Leucine-rich repeat signature | 576 | 589 | - | - | |
Seca4g02491 | 1086 | Gene3D | Ribonuclease Inhibitor | 23 | 201 | IPR032675 | - | |
Seca4g02491 | 1086 | SMART | serkin_6 | 763 | 1038 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca4g02491 | 1086 | FunFam | LRR receptor-like serine/threonine-protein kinase RCH1 | 200 | 325 | - | - | |
Seca4g02491 | 1086 | SUPERFAMILY | RNI-like | 81 | 416 | - | - | |
Seca4g02491 | 1086 | Pfam | Leucine rich repeat N-terminal domain | 25 | 66 | IPR013210 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca4g02491 | Seca-Chr4 | 42437855 | 42442298 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca4g02491 | 22 | 1076 | Receptor kinase-like Gene Family | AT5G56040 | 47.694 | 0.0 | 937 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XI-1 | Seca4g02491 | Pkinase | 5.4e-42 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca4g02491 | - | - | gmx:100807225 | 1890.93 |