Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02477 ATGGATAAAAGGTGGGTTTCTTGTGAGGGACTTGGAGTTCTTGGAATGGGAAGGTGTTGGTTGGTTGGGGTCTTGATTGTGGTGGGCTATGCCTGCTTGCTGGGTACTGTTGAGGTAGAAGGGTACCCAGCTGAGGATCTGGTGGAGAAGTTGCCTGGCCAACCCAAGGTTGATTTCAGACAATATGCTGGTTATGTTGATATAGATGTCAAGCATGGGAGGAGCTTGTTCTACTATTTTGTGGAGGCTGAACATGACCCTGATAAGAAGCCCCTCACCCTTTGGCTCAATGGAGGTCCTGGATGTTCCTCAATTGGGGGAGGTGCCTTCACTGAATTGGGTCCCTTTTATCCTAGAGGTGATGGACGTGGTCTCAGAACAAATTCAATGTCTTGGAATAGAGCATCTAACCTCATCTTTGTGGAGTCTCCTGCTGGAGTTGGTTGGTCATACTCAAATACAACTTCGGATTATAACTCTGGAGACACATCCACAGCCAATGATATGCTTGTGTTCATGCTGAAATGGTACGAGAAGTTTCCTTCCTACAGATCAAGGGAGCTGTTCCTCACTGGAGAAAGCTATGCAGGACATTACATACCACAGTTAGCTAATGCTCTTCTGGATTATAATGCTCATTCAACTAGTTTCAAATTCAACATTAAAGGAGTTGCTATTGGAAATCCACTTCTGAAACTTGATCGTGATACACAAGCAACATATGAATACTTCTGGTCACATGGAATGGTTTCCGATGAAATTGGCCTTGCCATTATGAACAATTGCGATTTTGATGATTATACCTTTGATGGTACTCATAATGTATCTCAATCATGCAACGATGCCATAAATAAAGCTAATGAAATTGTTGGCGATTATATAAACAACTACGATGTGATTCTGGATGTTTGTTATCCATCCATAGTTGAACAAGAACTGAGATTGAAAAAGATGGCTACTAAAATAAGCATAGGTGTAGATGTCTGCATGAATTATGAAAGAAGTTGGTACCTCAATCTCCCTGAGGTTCAGAAGGCTCTTCATGCAAACCGTACCAATCTTCCGTATAGATGGTCCATGTGCAGTGGTGTTTTAAATTATAGCGACACTGATCCTAACATCAATATCCTTCCAGTTCTCAAACGGATAGTTCAAAACCATATTCCAGTGTGGGTTTTCAGTGGAGACCAAGATTCTGTTGTGCCATTGCTAGGTTCTCGAACACTCATTCGTGAACTAGCTCAAGATCTGAAGTTCAAGATTACAGTCCCATATGGAGCTTGGTTCCACATAGGCCAGGTTGGGGGTTGGGTAACGGAGTATGGAAATTTGTTGACTTTTGCCACAGTAAGGGGAGCTGCTCACATGGTACCATATGCACAACCTTCAAGAGCACTGCATATGTTCAGTTCCTTTGTGCGTGGCAGGAGATTGCCAAACACAACACGCTCTTCAATTGATTAA 1464 0.4276 MDKRWVSCEGLGVLGMGRCWLVGVLIVVGYACLLGTVEVEGYPAEDLVEKLPGQPKVDFRQYAGYVDIDVKHGRSLFYYFVEAEHDPDKKPLTLWLNGGPGCSSIGGGAFTELGPFYPRGDGRGLRTNSMSWNRASNLIFVESPAGVGWSYSNTTSDYNSGDTSTANDMLVFMLKWYEKFPSYRSRELFLTGESYAGHYIPQLANALLDYNAHSTSFKFNIKGVAIGNPLLKLDRDTQATYEYFWSHGMVSDEIGLAIMNNCDFDDYTFDGTHNVSQSCNDAINKANEIVGDYINNYDVILDVCYPSIVEQELRLKKMATKISIGVDVCMNYERSWYLNLPEVQKALHANRTNLPYRWSMCSGVLNYSDTDPNINILPVLKRIVQNHIPVWVFSGDQDSVVPLLGSRTLIRELAQDLKFKITVPYGAWFHIGQVGGWVTEYGNLLTFATVRGAAHMVPYAQPSRALHMFSSFVRGRRLPNTTRSSID. 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02477 487 Gene3D - 329 365 - -
Seca4g02477 487 PRINTS Carboxypeptidase C serine protease (S10) family signature 176 201 IPR001563 GO:0004185|GO:0006508
Seca4g02477 487 PRINTS Carboxypeptidase C serine protease (S10) family signature 128 140 IPR001563 GO:0004185|GO:0006508
Seca4g02477 487 PRINTS Carboxypeptidase C serine protease (S10) family signature 445 458 IPR001563 GO:0004185|GO:0006508
Seca4g02477 487 PRINTS Carboxypeptidase C serine protease (S10) family signature 141 151 IPR001563 GO:0004185|GO:0006508
Seca4g02477 487 FunFam Carboxypeptidase 376 475 - -
Seca4g02477 487 SUPERFAMILY alpha/beta-Hydrolases 39 481 IPR029058 -
Seca4g02477 487 Gene3D - 376 475 - -
Seca4g02477 487 Gene3D alpha/beta hydrolase 43 305 IPR029058 -
Seca4g02477 487 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 47 462 IPR001563 GO:0004185|GO:0006508
Seca4g02477 487 FunFam Carboxypeptidase 42 306 - -
Seca4g02477 487 ProSitePatterns Serine carboxypeptidases, serine active site. 190 197 IPR018202 GO:0004185
Seca4g02477 487 Pfam Serine carboxypeptidase 53 475 IPR001563 GO:0004185|GO:0006508
Seca4g02477 487 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02477 Seca-Chr4 42311101 42315762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02477 336 478 Calmodulin-binding Proteins AT2G22960 26.573 1.23e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02477 K16297 - gmx:100803335 889.412