Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02473 ATGTTCGATGGACGCCACATTATCAGTGGTAATGTATTACTAACTGAATGCCTTGATTGGTATTTTGGAAATGTGCTAGCTGCCGTTGCATGGGAGGCAGGGAAGCCACTGGTGATTGAAGAAGTAGAGGTGGCGCCACCAAAGGCTGGTGAAGTGCGTTTGAAGATACTCTTCACCTCCCTTTGCCACACTGATGTTTACTTTTGGGAAGCCAAGGGTCAGACTCCATTGTTTCCACGTATATTTGGTCATGAAGCTGGAGGGATTGTGGAGAGTGTAGGCGAGGGTGTGACCCATCTGAAACCAGGGGACCATGCCCTCCCTGTATTCACAGGGGAGTGTGGTGAATGCCCACATTGTAAGTCAGAGGAAAGCAACATGTGTGATCTGCTCAGGATTAACACTGATCGGGGTGTCATGATCCATGACAATGAGTCAAGATTCTCTATTAAGGGAAAGCCTATATTCCATTTTGTGGGTACCTCTACATTCAGTGAATACACTGTTGTCCATGCTGGATGTGTTGCAAAGATCAACCCTGCTGCTCCCCTTGACAAAGTTTGTGTTCTCAGTTGTGGAATATGCACAGGTCTTGGTGCTACTGTCAATGTTGCAAAACCAAAACCTGGTTCTTCTGTTGCTATCTTTGGACTTGGAGCCGTTGGCCTTGCTGCTGCTGAAGGGGCAAGAATTTCTGGTGCATCAAGAATCATTGGGGTTGATCTAGTTTCCAGCCGATTTGAACTTGCTAAGAAGTTTGGGGTTAATGAATTTGTGAACCCAAAAGATTATGACAAACCTGTACAACAGGTAATTGCTGAAATGACCGATGGAGGTGTGGATCGTGCTGTTGAATGTACTGGCGCCATCCAGGCCATGATCTCAGCATTCGAATGTGTCCATGATGGTTGGGGTGTTGCTGTACTTGTTGGAGTGCCAAGCAAAGATGATGCATTTAAAACTCATCCTGTGAATTTCTTGAATGAGAGAACTCTTAAGGGTACTTTTTATGGCAACTACAAACCCCGCACTGATCTTCCTTCAGTTGTGGAGAAGTACATGAATGGGGTAAGCTTATATATGTTAAGGATTGTGCAGTCTTTCAGATGA 1110 0.4532 MFDGRHIISGNVLLTECLDWYFGNVLAAVAWEAGKPLVIEEVEVAPPKAGEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNMCDLLRINTDRGVMIHDNESRFSIKGKPIFHFVGTSTFSEYTVVHAGCVAKINPAAPLDKVCVLSCGICTGLGATVNVAKPKPGSSVAIFGLGAVGLAAAEGARISGASRIIGVDLVSSRFELAKKFGVNEFVNPKDYDKPVQQVIAEMTDGGVDRAVECTGAIQAMISAFECVHDGWGVAVLVGVPSKDDAFKTHPVNFLNERTLKGTFYGNYKPRTDLPSVVEKYMNGVSLYMLRIVQSFR. 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02473 369 FunFam alcohol dehydrogenase 1-like isoform X1 33 196 - -
Seca4g02473 369 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 183 356 IPR036291 -
Seca4g02473 369 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 83 97 IPR002328 GO:0008270|GO:0016491
Seca4g02473 369 PANTHER ALCOHOL DEHYDROGENASE 26 356 - -
Seca4g02473 369 SUPERFAMILY GroES-like 26 201 IPR011032 -
Seca4g02473 369 CDD alcohol_DH_plants 27 356 - -
Seca4g02473 369 FunFam Alcohol dehydrogenase class-P 197 335 - -
Seca4g02473 369 Gene3D - 197 335 - -
Seca4g02473 369 Pfam Alcohol dehydrogenase GroES-like domain 50 177 IPR013154 -
Seca4g02473 369 Gene3D - 33 356 - -
Seca4g02473 369 Pfam Zinc-binding dehydrogenase 220 344 IPR013149 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02473 Seca-Chr4 42256852 42259626 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02473 51 341 Monolignol Biosynthesis Gene Families AT1G72680 27.304 3.15e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02473 K18857 - gmx:100801918 646.351