Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02444 ATGGATGCAGACCTTGACAATTTTTCACAGATGAATATGGAGACCGATCACATTTCAGATAATAGACCGGTAACACATTCTGATCCTTTTGACATTCCACAATCTACTATTGTTGATGAACTCCATGTCGAACCTCATGTTGGGATGAAATTTAATTCATTGGAAGAAGCTGTAGAATTTTATAAATCATTTGCTAAGGCGAAAGGGTTCGGGATTCGTACTCGCTCTAGTAAAAAGAATTATTGCATTTTGGTATGTGTTAGGGAAGGTGAACGTCTAGTGAAAAGTGATAAAAATGAAAATGAAAATGGAGAAATGAGAGAGGTTAAGAGAAAATGTTCAACCATGCGCATGGGATGTCAAGCATCACTTATTGTGTCAAAAAATATGAAACGAGACATATGGGTTATAAAATCTTTTGACAATAATCATAATCATGTCATGGCTAGTCCTAAGAGTGTGTCTTATTTGAGGTGTCATAAAAAAATGAGTGTTGCTACCAAAAATCTTGTTGAAAAGTTTAGTGAAGATGGTTTACCTACTGGAAAGGTTGCTTCAATGTTTGATGGTAGTGGTTTAGCTTTTTCTAATAGAGATTGTTGGAATCATATGAGAAATGTCCGTATGAGGGATTTGGATGTTGGAGATGCACAAGGTGTTTTTAATTATTGCAAACATAAGCAAGCTCAAGATTCTAATTTTTTCTATGCAATACAAATTGATGATGATGCTAGAATGGTAAATTTCTTTTGGGTGGATGCTAGATCAAGGTTAGCTTACCAACATTTTGGATATGTTGTTACCTTTGACACTACATATAAAACCAACAAATATAGCATGCCATTTGCCTCGTTTACTGGGTTGAACCATCATCTTCAATCAATTTTATTTGGTTGTGCATTGTTACAAGATGAATCTGAGGCATCTTTTATATGGCTATTTGAAACTTGGCTTGAGGCAATGGATAAGAAGATGCCAATATCAATAATAATTGATCAAGATTTAGCTATTGGTGCTGCTGTGGCCAAGGACAATGAATGGCTTCAGAGGTTATTTGAAATTAGAGAATCATGGATACCGGTCTATAATCGAAGCACTTTTTTTGGTGGTATGAATACTACACAGAGAAGTAAGAGTATCAATTCCTTTTTTGACTCATTTGTTGATGCAAACACAACACTTCAAGACTTTGTGGTAAAATTTGAGAAGGCAATTAATAATCGATATGAAGATGAAAAACGAGAGGACTTTGAGTCTAGACACAAATCACGGATCTTGAGTATCGGCTCAAAAATTGAGGAGCATGTTGCATCCGTCTATACTAGGAATATGTTTGGGAAGTTTCATAATGAGCTTGCAAGTGTTAGCCATTTTACAAAGGAGAAGATTGAGAAAAATGATTCACAATGTAAGTATCGAGTATCTAATTGTTTTCATGCTCGAGATACATTCGTTGTTGATATAAATTTAGATTCAAAGAATGCTATATGTGGTTGCCAACATTTTGAATTCATGGGAATACTATGTAGGCACATCTTGGTAATTTTTCAAGCCAAAAATATTATTCAAATTCCCGGTGCGTATATTTTGCAGTGTTGGACAAAGGAAGCCAATAGGTATATTGAGGTTGGTGCTCTTGATATTCAAAATCATGAATCAGATGTTTTGAGAAGTATACATGTGCAACGTCAATTTAAAAAATTTGCTGATTTGGCAAAAAAATCAGAAGATGCATATAAGTATATTGTGGCAGAATTTGATCGCGTTTATGATATAGCCTCTACAATTGGAACAGAAATGTCAAATCTCAATGAAGCTCTTCTAGATCCAAACCAGCAGAATACGATGTCTGGCACAAATTATGATGATTCTAATTTCAATATCAAGAATCCACATATATCACAGACAAAGGGTAGAAAAAGGAATGATTCTGACAAGGTGCCTCTAGTAGGAAGATGTAAAAGTGGTATTGAATTGTCAATGAACAAGTCTTTGGTTAAAAGGAGAGCATGGAAATCTTGTGGAGAATATAGTCACTACCAATCAACTTGTAAACAGAAGATAATGTTTTTTCTACTAAGGGCTGGTGGAATGCCTCATTAA 2103 0.3476 MDADLDNFSQMNMETDHISDNRPVTHSDPFDIPQSTIVDELHVEPHVGMKFNSLEEAVEFYKSFAKAKGFGIRTRSSKKNYCILVCVREGERLVKSDKNENENGEMREVKRKCSTMRMGCQASLIVSKNMKRDIWVIKSFDNNHNHVMASPKSVSYLRCHKKMSVATKNLVEKFSEDGLPTGKVASMFDGSGLAFSNRDCWNHMRNVRMRDLDVGDAQGVFNYCKHKQAQDSNFFYAIQIDDDARMVNFFWVDARSRLAYQHFGYVVTFDTTYKTNKYSMPFASFTGLNHHLQSILFGCALLQDESEASFIWLFETWLEAMDKKMPISIIIDQDLAIGAAVAKDNEWLQRLFEIRESWIPVYNRSTFFGGMNTTQRSKSINSFFDSFVDANTTLQDFVVKFEKAINNRYEDEKREDFESRHKSRILSIGSKIEEHVASVYTRNMFGKFHNELASVSHFTKEKIEKNDSQCKYRVSNCFHARDTFVVDINLDSKNAICGCQHFEFMGILCRHILVIFQAKNIIQIPGAYILQCWTKEANRYIEVGALDIQNHESDVLRSIHVQRQFKKFADLAKKSEDAYKYIVAEFDRVYDIASTIGTEMSNLNEALLDPNQQNTMSGTNYDDSNFNIKNPHISQTKGRKRNDSDKVPLVGRCKSGIELSMNKSLVKRRAWKSCGEYSHYQSTCKQKIMFFLLRAGGMPH. 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02444 700 Pfam FAR1 DNA-binding domain 59 148 IPR004330 -
Seca4g02444 700 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 40 587 IPR031052 GO:0006355
Seca4g02444 700 MobiDBLite consensus disorder prediction 618 633 - -
Seca4g02444 700 Pfam SWIM zinc finger 495 520 IPR007527 GO:0008270
Seca4g02444 700 Pfam MULE transposase domain 266 342 IPR018289 -
Seca4g02444 700 ProSiteProfiles Zinc finger SWIM-type profile. 484 520 IPR007527 GO:0008270
Seca4g02444 700 SMART 26again6 495 522 IPR006564 GO:0008270
Seca4g02444 700 MobiDBLite consensus disorder prediction 618 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02444 Seca-Chr4 41872712 41875093 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g02444 FAR1 6.8e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02444 - - aprc:113859540 723.776