Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02441 ATGTCATTAGTCAGATCTGCTAAGCTAGCTCCTACATCGTATAAAAATGCTAAGCTCTACTCACTAAAGGGAACTGATGTTAGACCTGATGTGTCCTCCCAAAGTTGCAGTCCTCATAAGCATAGAAGCATGTATACAGATACTTACTCCAGCGAGAGTTATGAGAAGTACTTCCATGACTCGCAAACAGAAGAACTGATAGAACCATCTAGTTCTGGCATCTCTAGCAGTTCAATTCACCCTGACGGTGCCTCTTCTTACCAGCTCAGAGCTAGTTCAGGAGCTTCTATGGTTGCTGATGACCTATCTGATACTTCTTTAATGTCTACAAGGCATCATAATGCTTATCAGTCCAACTTTGGATCAGATTTTTTGGAAAATGGAGGCCTGGATTCACTTGATGATGATGGTCTAATGAGATTAAGACTACAAGCATTGGAGAGGGCATTGCTTGACGATAGTGGTGCTGAGGAGGAGGAGGAAGAAGAAGACGACATATTTGGGACTGCTCAAAGAATGGAAATTGATCATGATATTGCTGAGTGGGCTGATCCCATTCAGAATATGCTGCTCCATGACTCACCAAAGGAGAGTTCATCTTCAGATTCCATTATTAGCAGTATCAGTAGCACCAAAGAAATATCACAAATTTCTCAGACCCCCAAGAAACTGCTTTATGAATGTGCTATTGCACTTTCAGAAGGAAATGGTGAGGAAGCCTCATCAATGATAAATGATCTCCGGCAGATGGTCTCAATTCAGGGAGAGCCTACCCAAAGAATTGCAGCCTATATGGTGGAGGGACTCGCAGCTCGCCTGGCTGAATCTGGCAAAAGTATTTATAAAGCTCTGAAATGCAAGGAACCTCCTTCTTCAGACCGTCTAGCAGCCATGCAGATACTGTTTGAGATTTGCCCATGTTTTAAATTTGGATTTATTGCTGCTAACAATGCAATTACAGAGGCAATTAAAGACGACGAGAAGATTCATATAATAGATTTTGACATCAATCAAGGAAATCAGTACATTAATCTAATTCAAACACTTGCTTCAAGGTCCAGTAAGCCATCCCATGTTAGATTGACTGGGGTGGATGATCCTGAGTCTGTGCAGCGATCTGTTGGAGGCCTAAAGATCATTGGACAAAGACTTGAAAAGCTGGCAGAGGCCCTTCGGTTGCCATTTGAGTTTCAAGCAGTGGCTTCGAGGACTTCCATTGTCACCCCATCTATGTTCAACTGTCTTCCTGGAGAAGCCCTTGTTGTAAACTTTGCATTCCAGCTTCATCACATGCCTGATGAGAGTGTTTCAACGGTAAATGAACGAGACCAACTTCTTCGCTTGGTGAAGAGCCTGAATCCAAAGCTTGTAACGGTTGTGGAGCAAGATGTAAACACTAACACTACCCCCTTCTTACAGAGATTTGTTGAAGCCTACAATTACTACTCTGCTGTGTTTGAGTCGCTTGATATTACTCTTCCTAGAGAGAGCCAGGACAGGATGAATGTTGAAAGGCAATGCTTAGCAAGAGACATTGTCAATGTTATTGCATGTGAAGGTGAGGATAGGATAGAACGGTATGAAGTTGCGGGAAAATGGAGAGCAAGGATGACAATGGCTGGCTTCACTCCGTCCCCAATGAGCACAAATGTGGCTGATGAAATCCGAAAACTCATTAAGCTGTACTGTGACAGGTACAAGATAAAGGAGGAAATGGGTGCACTTCATTTTGGTTGGGAAGACAAAAACTTGATTGTTGCTTCAGCATGGAGGTGA 1776 0.4296 MSLVRSAKLAPTSYKNAKLYSLKGTDVRPDVSSQSCSPHKHRSMYTDTYSSESYEKYFHDSQTEELIEPSSSGISSSSIHPDGASSYQLRASSGASMVADDLSDTSLMSTRHHNAYQSNFGSDFLENGGLDSLDDDGLMRLRLQALERALLDDSGAEEEEEEEDDIFGTAQRMEIDHDIAEWADPIQNMLLHDSPKESSSSDSIISSISSTKEISQISQTPKKLLYECAIALSEGNGEEASSMINDLRQMVSIQGEPTQRIAAYMVEGLAARLAESGKSIYKALKCKEPPSSDRLAAMQILFEICPCFKFGFIAANNAITEAIKDDEKIHIIDFDINQGNQYINLIQTLASRSSKPSHVRLTGVDDPESVQRSVGGLKIIGQRLEKLAEALRLPFEFQAVASRTSIVTPSMFNCLPGEALVVNFAFQLHHMPDESVSTVNERDQLLRLVKSLNPKLVTVVEQDVNTNTTPFLQRFVEAYNYYSAVFESLDITLPRESQDRMNVERQCLARDIVNVIACEGEDRIERYEVAGKWRARMTMAGFTPSPMSTNVADEIRKLIKLYCDRYKIKEEMGALHFGWEDKNLIVASAWR. 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02441 591 MobiDBLite consensus disorder prediction 61 87 - -
Seca4g02441 591 MobiDBLite consensus disorder prediction 64 87 - -
Seca4g02441 591 Pfam GRAS domain family 223 591 IPR005202 -
Seca4g02441 591 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 196 586 IPR005202 -
Seca4g02441 591 ProSiteProfiles GRAS family profile. 212 591 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02441 Seca-Chr4 41804332 41806107 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02441 1 591 GRAS Transcription Factor Family AT1G21450 61.102 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca4g02441 GRAS 1.5e-135 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02441 - - gmx:100798897 970.689