Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02440 ATGGAGGATTCTTCAGCTTCAGCAGGTGAAGACACCAATAAGAATACTTGTCCTCGTGGTCACTGGAGACCTGCTGAAGATGAAAAGTTAAGACAACTTGTTGAACAATATGGTGCTCAAAACTGGAATTCAATTGCTGAGAAGCTCCAAGGAAGATCAGGGAAAAGTTGTAGATTGAGGTGGTTCAATCAGCTTGATCCTCGAATTAACAGAAGACCATTCACGGAAGAGGAAGAAGAGAGGTTACTTGCAGCGCATCGTATTCATGGGAACAAGTGGGCACTGATAGCGAGGCTTTTCCCTGGTAGAACTGATAATGCTGTCAAGAATCACTGGCATGTTATAATGGCAAGAAAGCAAAGGGAACAGTCCAAGTTATGTGGGAAGAGAACTTTCCAAGACGTTTATAATGATTATTCTTCTATCAACACTATTCATCATCACTTCCCTCCTGCTGATAAAAGATCACAGTTATTCACCACCACCAGATCAATTGATAATATTAATGGAAGATTCTTTGACTTTCAGAACCAGGAGAATAATATTAATAAAGATAGGATACTAATTGCAGCAGATACTACTACTACTACTACTCCCTCTTGGAATTTTGCTTCTGTGCCAACCACCACCAGCATAAACAGTACTAGTACTTCTCTTGTAGTGGATTCACTTAGAACAAAAGGATCTAATGTTTACCTCTCAGAATGTTCCAGAAGCAGCTCATCAGATAGATCATTTCTTTATAGAATTTCTCCCAATTCTACTTCCTTTGGCAGCTCATTATTTTCAAACTGCTACAAGAGGGTTGTTCCAAGTCCTTTTGGATTCTTTGGTTCTTCTAATGCTGAGGATAGAAGGATAAAGAGGGACTTGATGAGTAGTTTATGTGATAACTCATCATCCACATTCACAAAGTTGATGAGGACTTCCACTGAGAAAAAAGATCAACAACAACAAGCAGATCATCATGAGAAGCCTAATATTGACCACAAAGAAGTTCCTTTCATTGATTTTCTTGGTGTTGGTGTCTCTTCTTCATGA 1041 0.391 MEDSSASAGEDTNKNTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRTFQDVYNDYSSINTIHHHFPPADKRSQLFTTTRSIDNINGRFFDFQNQENNINKDRILIAADTTTTTTPSWNFASVPTTTSINSTSTSLVVDSLRTKGSNVYLSECSRSSSSDRSFLYRISPNSTSFGSSLFSNCYKRVVPSPFGFFGSSNAEDRRIKRDLMSSLCDNSSSTFTKLMRTSTEKKDQQQQADHHEKPNIDHKEVPFIDFLGVGVSSS. 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02440 346 CDD SANT 82 113 IPR001005 -
Seca4g02440 346 Gene3D - 73 148 - -
Seca4g02440 346 CDD SANT 22 63 IPR001005 -
Seca4g02440 346 ProSiteProfiles Myb-like domain profile. 19 65 IPR001005 -
Seca4g02440 346 FunFam MYB transcription factor 19 70 - -
Seca4g02440 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 65 IPR017930 -
Seca4g02440 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Seca4g02440 346 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Seca4g02440 346 MobiDBLite consensus disorder prediction 308 327 - -
Seca4g02440 346 Gene3D - 19 70 - -
Seca4g02440 346 PANTHER MYB PROTEIN-RELATED 19 298 - -
Seca4g02440 346 MobiDBLite consensus disorder prediction 1 24 - -
Seca4g02440 346 SUPERFAMILY Homeodomain-like 18 112 IPR009057 -
Seca4g02440 346 MobiDBLite consensus disorder prediction 307 327 - -
Seca4g02440 346 FunFam MYB transcription factor 72 141 - -
Seca4g02440 346 Pfam Myb-like DNA-binding domain 22 82 - -
Seca4g02440 346 SMART sant 70 118 IPR001005 -
Seca4g02440 346 SMART sant 18 67 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02440 Seca-Chr4 41782172 41783507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02440 17 126 MYB Transcription Factor Family AT1G17950 84.545 9.42e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g02440 Myb_DNA-bind_6 2.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02440 K09422 - gmx:100817328 389.423