Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02429 ATGGAGAGCCCTCCTCCTCCGTCTTACATTGTGGTTGCGGCTGATGCCACCAGAGACCGCAATGAGCATGAGATCAAGCTCATCATTGATCACATTCGGGCCAGGGGTGACATTCTCTCTGCTCGTGATAGGTTGCTTCTGCTCTGCGTCTTGCATAAGGTGTCTCACCCAATGGGATATCAGACATTAGCATGCCCCGAGTCTTTTTCTGGCACGAACTTTCGTGCAATGGAGGAAGAAGTCAGAAAGAAAGTGGACTTATATACAAATGAACTTCTATCAAGTTATGAAGATTTTGAAAATGAAGGGGTTAGTATTGACATTCAAGTCACCGCGGGTTTTCCAATTAGACAGGTTATTTTACAAGAGGTTACAAACTATAATGCATCTTGGATTATACTAGATAGACATCTTCGGCGCGACCTGAGATACCACCTTAACAAGATGCCATGTAAGGTTGCATTGGTTAAAGATGACTTATCTGTGGAAATATGGAGATCTCATTGTACACGAGACACAATTGTCACAGAAACAAAGCTTATCTATTCATTGTCCAAGTTCGTGTCACTATCAGATTGTCATAATAATCAAGACTTCGAGCAGTCTATTTACTCTTGCAAAAGTTATCCCCATTCCATAACTTCTTCTGATACCTCTAGTACCATTAAGAGCTATACAAAGCATTCATATGCTAACAGGTCACGGGATCACAGTTCTTTATTAGATTTTGGATCTTCTTCTAAGCATGAAAGATCAGGCATAAGCATCACAGGAGAATATAGACATTTCATTACTTCTCAGATTGGTCAAAAGCAAAACCAATGTGGCTTTCTACCAAAATCTTCAGATGCACCAATTCTTTGTGCTGGCTGTGGGACAAAGACTGAGTTATCTATCAAGGAGTCCATGAGGTTCAACTATTCTGAAATACAGCTTGCAACAAATGATTTTTCAAAGGATAACTTAGTAGGTGAAGGTGGATATGGTCATGTATACAAGGGTGTGCTTAAAGATGGACAGCAAATTGCTGTAAAGGTAAGGAAAGAAGAAAGTACACAAGGGTTTTCTGAATTTCATTCTGAGGTGTATGTCTTAAGCTTTGCTCGACACAAGAATATAGTGATGCTGCTGGGTTACTGTTGCAAAGAGAAGAAGAATATTCTGATATATGAATATATTTGCAATAAGTCTCTTCATTGGCATTTATTTGAAAATACTGCAGCAGTTCTTGATTGGCCCCAAAGGTATGCTATTGCCATTGGAACTGCAAAGGGATTGCGTTTTCTACATGAGGAATGCCGTGGTGGCCCTATTATTCATAGAGACATGCGACCAAGCAATATACTTCTCACTCATGATTTTGTTCCCATGCTAGGTGACTTTGGCCTTGCCAAATGGAAAACTGGTGATGATCCTCTTCAAACAAGGATAATGGGCACTTTAGGATACCTTGCTCCTGAGTATGCTGAAGATGGTATTGTTTCTGAAGGGACAGATGTGTATTCTTATGGCGTTATTCTGTTACAATTGATATCAGGACGCAAAGTGGGCAACTCCAATAATTCGGAACAACAACAATCTCTCCGACAATGGGCTGAGCCAATCATTGAGAGGTTGGCTTTACATGAACTGATTGACCCTCGTTTGGGAGAATCATATGACACATATGAACTATACCTCATGGCTAAAGCAGCATACTTTTGTATGCAAAGAAAGCCTGAGATGCGTCCATCAATGGGAGAGGTTGTGCGCCTTCTTGAGGGAGAAAGTAATCACTTCCTTTCCTTGGAAGATCAATTTGTACCTAATCATGACAGTTGA 1821 0.4058 MESPPPPSYIVVAADATRDRNEHEIKLIIDHIRARGDILSARDRLLLLCVLHKVSHPMGYQTLACPESFSGTNFRAMEEEVRKKVDLYTNELLSSYEDFENEGVSIDIQVTAGFPIRQVILQEVTNYNASWIILDRHLRRDLRYHLNKMPCKVALVKDDLSVEIWRSHCTRDTIVTETKLIYSLSKFVSLSDCHNNQDFEQSIYSCKSYPHSITSSDTSSTIKSYTKHSYANRSRDHSSLLDFGSSSKHERSGISITGEYRHFITSQIGQKQNQCGFLPKSSDAPILCAGCGTKTELSIKESMRFNYSEIQLATNDFSKDNLVGEGGYGHVYKGVLKDGQQIAVKVRKEESTQGFSEFHSEVYVLSFARHKNIVMLLGYCCKEKKNILIYEYICNKSLHWHLFENTAAVLDWPQRYAIAIGTAKGLRFLHEECRGGPIIHRDMRPSNILLTHDFVPMLGDFGLAKWKTGDDPLQTRIMGTLGYLAPEYAEDGIVSEGTDVYSYGVILLQLISGRKVGNSNNSEQQQSLRQWAEPIIERLALHELIDPRLGESYDTYELYLMAKAAYFCMQRKPEMRPSMGEVVRLLEGESNHFLSLEDQFVPNHDS. 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02429 606 Pfam Protein kinase domain 318 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02429 606 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524
Seca4g02429 606 CDD STKc_IRAK 323 588 - -
Seca4g02429 606 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 280 591 - -
Seca4g02429 606 ProSitePatterns Tyrosine protein kinases specific active-site signature. 438 450 IPR008266 GO:0004672|GO:0006468
Seca4g02429 606 Gene3D Phosphorylase Kinase; domain 1 289 392 - -
Seca4g02429 606 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 289 392 - -
Seca4g02429 606 Gene3D Transferase(Phosphotransferase) domain 1 394 599 - -
Seca4g02429 606 SUPERFAMILY Protein kinase-like (PK-like) 301 586 IPR011009 -
Seca4g02429 606 FunFam Probable receptor-like serine/threonine-protein kinase At5g57670 393 601 - -
Seca4g02429 606 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 43 159 - -
Seca4g02429 606 ProSiteProfiles Protein kinase domain profile. 317 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02429 Seca-Chr4 41490675 41496846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02429 305 587 Trihelix Transcription Factor Family AT5G38560 45.517 1.12e-79 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Seca4g02429 Pkinase 4.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02429 - - vun:114163670 1021.92