Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02417 ATGGCTGTGGCTTTGAACTCAAAGAAGCTGCTGATTAATATGCTGCTACTTGTTATGCTCCTCCTCTTCTCAGCAACAGCAGCTCAACCGTCCATGACGTCACTGCCAAACTGCCCAACAAACTGTGGCTCCGTTACCATTCCCTTCCCATTTGGCATCACGGAGGATTGTTCCCTTGATAACACGTTTCTAATAAGTTGCAACCAAACCTCTTCACCACACAGTAGTCACACAAACAGTCCTTTCTTGCCACAAAGTAATGTTAGTGTGTTAAACATCTCGCTCAACGGCCAACTGCAGGTTGCATGGCCAGTAGCCAGCGATTGCTATGCTGACAGAGGCATACGCGTGAATCAAACAGCTCAAGGCGTCGAACTGACGCATTTTCAAGTCTCGTCAAGTCGAAACAAGTTTACGGTGATTGGTTGTGACACGCTTGGAGTGGTGGTCGGAATCGATTCTGATGAAAGGAACTACACAACGGGATGCGTGTCTTTGTGCAACAGACTTGATGATATCGTAGCTAATGGGTCTTGCTCCGGCACTGGTTGTTGTGAGACTCCAATACCCCAAGGGCTATCGGCTGTCGGTTATGCTTCTGGGGCTGTGAATAACCACACAAACGTGCTTGGCTTCAATCCATGCGGTCATGCTTTTCTTGTGGAGGATGGAGCTTACGACTTTGTTTCCACGGACCTCGTCAAGTTTGACAAGACAGAGTTTCCTGTGGTTCTGGATTGGGCAATTGGGAACAAAACGTGCCAACAAGCTCAGAAAGAGGCTTCAAGTTATGCCTGTAAGGCAGACAACAGTGAGTGTTACAATTCCTTTCACGGACCAGCTGGTTATCTTTGCAACTGTTCTCATGGATTTCGGGGAAACCCTTACCTCCTTCATGGTTGCCAAGATATTGATGAATGCATGGAATCCAATGACTGCTTTGATGGAGCGAAATGCAACAATTTTGTCGGGAGTTACAATTGTTCATGCCCGGAAGGATATGAAGGAGACGGAAAAAATAATGGAACAAGATGTAGTCCCAAATCCAGTACCAATTCCAGGAGAGAGATCGTATTGATAATTGCTTTGAGTGTGAGTGTAGGCATTATAACACTACTAGTGGGATGCTTTTATGTGTACTGGGCATCGAAGAAAAGAAAGCTCATCAAACTTAAAGAACAATTTTTTCAACAAAATGGTGGTCTATTGTTACAACAACAAATAGCCAGGCATAGAGGGTCAACTGAAACAGCTAAAGTCTTCACTGAAGAAGAGCTAAGAGATGCTACCAACAACTTCGATGAAGGAAAGATCCTAGGCCAAGGTGGACAGGGAACAGTTTACAAGGGAGTATTATTAGACAATAGAATTGTAGCAATAAAAAAGTCCAAAATCAGTGACCCGAACCAAATTGAGCAATTTATCAATGAGGTCATCGTGCTTTCTCAAATCAACCATAGGAATGTGGTAAAGCTCTTGGGATGTTGTTTAGAGACAAAAGTTCCCTTGCTTGTTTATGAGTTCATTCACAATGGTACTGTTCATGAGCATCTTCATGATCAAATCCAAGCTTTAAAACTTACATGGAAAACAAGATTGAGAATAGCAACAGAAACTGCTGGAGCCTTGGCATACTTGCATTCTGCTACTTCAACACCAATCATACATAGAGATGTGAAAACTACAAACATACTACTTGATCGTAATCTCATTGCAAAGGTTTCTGATTTTGGAGCTTCTAGAATTGTCCCTCTTAATCAAAGTCAGTTAACTACTTTGGTGCAAGGAACACTAGGGTATCTTGACCCAGAATACTTCCAAACAAGCCAGTTAACTGAGAAGAGTGATGTCTATAGCTTTGGGGTTGTCTTAGCAGAGTTACTGACGGGAAAAAAGGCACTCTCTTTTGACAGACCAGAGGCAGATAGAAACCTAGCATTGTACTTCGTTTCTTCAATGAAAATGGGCCAGTTACTTCACATTTTGGATAGTCACATAATAGATGAGGAAAATATTGAGAAACTAATGGAAGTTGCCAATATTGCAAAACAATGTTTAAAGGTGAAGGGAGAGGAAAGACCTACCATGAAAGAAGTGGTAATGGAACTTGAGGGAATAATGGCCATGGAAAAGCACCGATGGGGAAGTGTTAATTTGTCTTTAGAAGAGACTGAAAACTTGCTTAAAGAAGCGCCATCTGTTTTCAATATTGAAGACGGTGTTAGTGGAAATGGCACTAGTTCTTCTGGCTTTGATAGCATGAGTCGTATTTCAATGTCATTGGGTGGTGGAAGATGA 2298 0.4238 MAVALNSKKLLINMLLLVMLLLFSATAAQPSMTSLPNCPTNCGSVTIPFPFGITEDCSLDNTFLISCNQTSSPHSSHTNSPFLPQSNVSVLNISLNGQLQVAWPVASDCYADRGIRVNQTAQGVELTHFQVSSSRNKFTVIGCDTLGVVVGIDSDERNYTTGCVSLCNRLDDIVANGSCSGTGCCETPIPQGLSAVGYASGAVNNHTNVLGFNPCGHAFLVEDGAYDFVSTDLVKFDKTEFPVVLDWAIGNKTCQQAQKEASSYACKADNSECYNSFHGPAGYLCNCSHGFRGNPYLLHGCQDIDECMESNDCFDGAKCNNFVGSYNCSCPEGYEGDGKNNGTRCSPKSSTNSRREIVLIIALSVSVGIITLLVGCFYVYWASKKRKLIKLKEQFFQQNGGLLLQQQIARHRGSTETAKVFTEEELRDATNNFDEGKILGQGGQGTVYKGVLLDNRIVAIKKSKISDPNQIEQFINEVIVLSQINHRNVVKLLGCCLETKVPLLVYEFIHNGTVHEHLHDQIQALKLTWKTRLRIATETAGALAYLHSATSTPIIHRDVKTTNILLDRNLIAKVSDFGASRIVPLNQSQLTTLVQGTLGYLDPEYFQTSQLTEKSDVYSFGVVLAELLTGKKALSFDRPEADRNLALYFVSSMKMGQLLHILDSHIIDEENIEKLMEVANIAKQCLKVKGEERPTMKEVVMELEGIMAMEKHRWGSVNLSLEETENLLKEAPSVFNIEDGVSGNGTSSSGFDSMSRISMSLGGGR. 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02417 765 CDD EGF_CA 303 337 - -
Seca4g02417 765 SUPERFAMILY EGF/Laminin 302 340 - -
Seca4g02417 765 MobiDBLite consensus disorder prediction 739 765 - -
Seca4g02417 765 CDD STKc_IRAK 439 706 - -
Seca4g02417 765 FunFam Fibrillin 2 298 341 - -
Seca4g02417 765 ProSitePatterns Calcium-binding EGF-like domain signature. 303 328 IPR018097 GO:0005509
Seca4g02417 765 ProSiteProfiles EGF-like domain profile. 303 346 IPR000742 -
Seca4g02417 765 SMART serkin_6 433 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02417 765 SMART egfca_6 303 346 IPR001881 GO:0005509
Seca4g02417 765 SUPERFAMILY Protein kinase-like (PK-like) 417 708 IPR011009 -
Seca4g02417 765 FunFam Wall-associated receptor kinase 2 403 508 - -
Seca4g02417 765 Gene3D Laminin 251 345 - -
Seca4g02417 765 Gene3D Phosphorylase Kinase; domain 1 407 508 - -
Seca4g02417 765 Pfam Wall-associated receptor kinase galacturonan-binding 38 98 IPR025287 GO:0030247
Seca4g02417 765 MobiDBLite consensus disorder prediction 739 756 - -
Seca4g02417 765 ProSitePatterns Serine/Threonine protein kinases active-site signature. 554 566 IPR008271 GO:0004672|GO:0006468
Seca4g02417 765 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 27 707 IPR045274 GO:0007166
Seca4g02417 765 Gene3D Transferase(Phosphotransferase) domain 1 509 724 - -
Seca4g02417 765 Pfam Protein kinase domain 434 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02417 765 Pfam Calcium-binding EGF domain 303 345 IPR001881 GO:0005509
Seca4g02417 765 SMART egf_5 253 302 IPR000742 -
Seca4g02417 765 SMART egf_5 306 346 IPR000742 -
Seca4g02417 765 FunFam Wall-associated receptor kinase 2 509 726 - -
Seca4g02417 765 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 319 330 IPR000152 -
Seca4g02417 765 ProSiteProfiles Protein kinase domain profile. 433 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02417 Seca-Chr4 41320940 41324886 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02417 12 765 Receptor kinase-like Gene Family AT1G21230 44.473 0.0 619
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Seca4g02417 Pkinase 4.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02417 - - gmx:100798027 1144.8