Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02414 ATGACGTCACTACCAAACTGTCCAACAAATTGTGGCTCCGTCACTATTCCCTTCCCATTTGGCATCACGGAGGATTGTTCCATTGATAACACGTTTCTCATAAGTTGCAACCAAACCTCTTCACCACACAGTCACACAAACAGTACTCCTTTCTTGCCACGAACCAATCTAAGTGTCCTAAACATCTCACCCAACGGCCAACTGCACGTTGCATGGCCAGTAGCCAACGACTGCTACACTGATAAAGGCGAACTCGCGAATCAAACATACTGGGAATTCTACCTGGATCAGTATAATTTGGTCGTCTCAAGTCGAAACGAGTTTATGGTGATTGGCTGCAACACCGTTGGACTAGGAATCGATTCTGAGAGAAAGAACTACACAACGGGATGCGTGTCTTTCTGCGACGACCGGCTTGCTGATATCGGGGCCAATAGGTCTTGCTCTGGCAATGGTTGTTGCGAGACTTCAGTACCCCCAGGACTATCGGAGTTAGAATATGTTTCTACTACCTATTTCAACATCACACGGGTTGACTTCAATCCATGTGGTCATGCTTTTCTTGTGGAAGATGGAGCCTACAACTTCGAGCCCAAAGACCTCTCTAAGTTGGAGCAGACAGCGTTTCCTGTGGTGTTGGATTGGGCAGTGGGGAGCCAAACGTGCCGAGAAGCTCAGAAAAAGGTTTCAAGTAATTATGCCTGTAAGGCAGACAACAGTGAATGTTACGATGCAACAGACAGACCTGGCTACCTTTGCAATTGTTCTCAAGGATTTCGGGGAAACCCTTACCTACCTCATGGTTGCCAAGCAACTCAAACCCAACCCATGTCACTACCAAACTGCCCAACAAACTGTGGCTCCGTCACCATTCCTTTCCCATTTGGCACCACCGAGTCCTGTTCACTGGACAGCACTTTCCTCATCAATTGCAACCAAACCTCTTCAACACTACACACTCCTTTCTTAGCCCAAAGAAATCTAAGTGTGCTAAACATCTCACTCAACGGCGAGCTGCACGTAGCATGGCCAGTAGCCAGCGATTGCTACGCTCGTAAAGGCAAACAGGTGAATCAAACAGTTCAAGGTCTCAACCTGACGAATTTTCACGTCTCAAGTCGAAACAAGTTGACAGTGGTTGGCTGTGACACCATTGGATTAGTGGTGGGAAACGATTCTAAGGGAAAGAACTACACAACAGGATGCGTGTCTTTGTGCAACAGGCTTGATGATATCGAAGCCAATGGAACTTGCTCTGGCACTGGTTGTTGTGAGATTTCAATACCTCAAGGGCTTTTGAGTTTCGGCTACGTTTCTGCAAGCATTTTCAACCACACACGCGTCCTTGACTTCAATCCCTGTGGTTATACTTTTTTGGTTGAAGATGGAGCCTACAACTTTGTTTCCACAGACCTTGTCAAATTTGAAAAGACAGAGTTTCCTCTGGTGCTGGATTGGGCAATTGGGAACAAAACGTGCCTAGAAGCTCAGAAAGAGGTTTCAAGTTATGCCTGTAAGGCAGAGAATAGTGAATGTTACAATTCAATGAAGGGAGCTGGTTACCTTTGCAAATGCTCTAATGGTTTTCGGGGAAATCCTTACCTTCTTCATGGCTGTCAAGATGTTAATGAATGCATGGAATCCAACGACTGCATTGATGGGGCGATATGCAGCAATTTTCCGGGGAGCTACAATTGTTCATGCGCGGAAGGATATGAAGGAGATGGGAAAAATAATGGAACCAGATGCAGTCCTAAATCCAGTACCAATTCCAGCAACCATAGGAATGTGGTAAAGCTCTTGGGTTGTTGTTTAGAAACAGAAGTTCCCTTGCTTGTTTATGAGTTCATTCAGAATGGTACTGTTTATGAGCATCTTCATGATCAAAGCCAAGCTTTAAAACTTACATGGAAAACAAGATTGAGAATAGCAGCAGAAACTGCTGGAGCCTTGGCATACTTGCATTCTGCTACTTCTACACCAATCATACATAGGGATGTAAAAACTACAAACATACTACTTGATCGTAATCTCACTACAAAGGTTTCTGATTTTGGAGCTTCTAGAATTATTCCTCTTGATCAAACTCAATTAACCACTTTGGTGAAGGGTACACTAGGATATCTTGACCCAGAATACTTTCACACAAGCCAGTTAACAGAGAAGAGTGATGTCTATAGCTTTGGAGTTGTCCTAGCAGAGCTATTGACTGGAAAGAAGGCACTTTCTTTTGACAGGCCAGAGGCTGTTGTAGACTGCCACATTATAGATGAGGCAAATGTTGAGCAACTAACAGAAGTTGCCAATATTGCAAAGAGGTGTTTAAGGGTGAAGGGAGAGGAAAGACCAACCATGAAAGAAGTGGCAATGGAACTTGAGGGAATAATAATTATGGAAAAGCATAGATGGGAAAGTGTCAATTTGTCTTCAGAAGAGACTGAAAGCTTGCTCAAAGCAGCACCAGTTTTCAGTTTTGTGGATGGCGCTGGTGGAAATGGCATTGCTTATGGCTTAGATAGCTTGAACTGTATTTCCATGTCGTTGAGTGGTGGAAGATGA 2559 0.4431 MTSLPNCPTNCGSVTIPFPFGITEDCSIDNTFLISCNQTSSPHSHTNSTPFLPRTNLSVLNISPNGQLHVAWPVANDCYTDKGELANQTYWEFYLDQYNLVVSSRNEFMVIGCNTVGLGIDSERKNYTTGCVSFCDDRLADIGANRSCSGNGCCETSVPPGLSELEYVSTTYFNITRVDFNPCGHAFLVEDGAYNFEPKDLSKLEQTAFPVVLDWAVGSQTCREAQKKVSSNYACKADNSECYDATDRPGYLCNCSQGFRGNPYLPHGCQATQTQPMSLPNCPTNCGSVTIPFPFGTTESCSLDSTFLINCNQTSSTLHTPFLAQRNLSVLNISLNGELHVAWPVASDCYARKGKQVNQTVQGLNLTNFHVSSRNKLTVVGCDTIGLVVGNDSKGKNYTTGCVSLCNRLDDIEANGTCSGTGCCEISIPQGLLSFGYVSASIFNHTRVLDFNPCGYTFLVEDGAYNFVSTDLVKFEKTEFPLVLDWAIGNKTCLEAQKEVSSYACKAENSECYNSMKGAGYLCKCSNGFRGNPYLLHGCQDVNECMESNDCIDGAICSNFPGSYNCSCAEGYEGDGKNNGTRCSPKSSTNSSNHRNVVKLLGCCLETEVPLLVYEFIQNGTVYEHLHDQSQALKLTWKTRLRIAAETAGALAYLHSATSTPIIHRDVKTTNILLDRNLTTKVSDFGASRIIPLDQTQLTTLVKGTLGYLDPEYFHTSQLTEKSDVYSFGVVLAELLTGKKALSFDRPEAVVDCHIIDEANVEQLTEVANIAKRCLRVKGEERPTMKEVAMELEGIIIMEKHRWESVNLSSEETESLLKAAPVFSFVDGAGGNGIAYGLDSLNCISMSLSGGR. 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02414 852 ProSiteProfiles Protein kinase domain profile. 443 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02414 852 Gene3D Laminin 492 584 - -
Seca4g02414 852 PANTHER OSJNBA0016N04.9 PROTEIN 274 568 - -
Seca4g02414 852 SMART egfca_6 541 584 IPR001881 GO:0005509
Seca4g02414 852 SMART serkin_6 486 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02414 852 FunFam Fibrillin 2 540 579 - -
Seca4g02414 852 SMART egf_5 492 540 IPR000742 -
Seca4g02414 852 SMART egf_5 221 270 IPR000742 -
Seca4g02414 852 SMART egf_5 544 584 IPR000742 -
Seca4g02414 852 ProSitePatterns Serine/Threonine protein kinases active-site signature. 662 674 IPR008271 GO:0004672|GO:0006468
Seca4g02414 852 SUPERFAMILY Protein kinase-like (PK-like) 592 793 IPR011009 -
Seca4g02414 852 FunFam Wall-associated receptor kinase 2 617 749 - -
Seca4g02414 852 ProSitePatterns Calcium-binding EGF-like domain signature. 541 566 IPR018097 GO:0005509
Seca4g02414 852 Pfam Protein tyrosine and serine/threonine kinase 592 792 IPR001245 GO:0004672|GO:0006468
Seca4g02414 852 ProSiteProfiles EGF-like domain profile. 541 584 IPR000742 -
Seca4g02414 852 Pfam Wall-associated receptor kinase galacturonan-binding 282 337 IPR025287 GO:0030247
Seca4g02414 852 Pfam Wall-associated receptor kinase galacturonan-binding 7 67 IPR025287 GO:0030247
Seca4g02414 852 CDD EGF_CA 541 575 - -
Seca4g02414 852 FunFam Wall-associated receptor kinase 2 491 539 - -
Seca4g02414 852 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 557 568 IPR000152 -
Seca4g02414 852 SUPERFAMILY EGF/Laminin 540 578 - -
Seca4g02414 852 Pfam Calcium-binding EGF domain 541 583 IPR001881 GO:0005509
Seca4g02414 852 Gene3D Transferase(Phosphotransferase) domain 1 585 820 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02414 Seca-Chr4 41260093 41282102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02414 593 852 Receptor kinase-like Gene Family AT1G21240 53.025 7.01e-89 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Seca4g02414 PK_Tyr_Ser-Thr 1.8e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02414 - - gmx:100798027 521.161