Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02411 ATGGCTTCATCCCAAAAGGCAGTGCTAGTTCCTTGGTTGCTATTAATGATCTCTGCAGTGTCACAAACAATTCATCCTCGCTGCCATAATAAATGTGGAAGTGTTAACATTCCGTATCCATTTGGTACATCTGAGGACTGTTACTTAAATAACAACTTTTATGTTGCTTGCAACACAAGTTACTACCCTCCCAAACCATTTTTGTGGAATTTGACCTCAAATATTGAGATCCTACTAGTGTCATTGGATGGCCATTTGCGGATAAACTCATTTGTAGCTTATGTCTGCCATGATGAAAATGACATGCATGTGGATACAGGGAGAGCATCTATGTCTTTGCAAGCATTCCCTTTCTCAGTTACCAGAAACAAGTTCATTGGAATTGGATGTGACACCCTTTCAGTCATCAATGCAACGATTGGAAAAAATTACTCTACTGGGGGGTGTTTCTCACTTTGTAGTAGTATAGATAATTCAGCAAATGGATCTTGTTTTGGTATTGGTTGCTGCCAAACCTCTATTCCTAAAAACATTCTGAAATATGAAGCTTATGTCCTGAGCTCCAATAAGATGCAAAGGGATGTGAACAACCCTTGTAGCTACTCTCTTTTGGTAGAAGAAGACTCTTTCAATTTTTCCAAAGCTGACTTCATCAATCTACAGAATAGAAGAACTGCTCCAACAGTTCTTGATTGGTCTGTTGGGAATCAGACATGTGAAGAAGCTAAGAAGAATTTGATTCTCTATGCCTGCCAAGCAAATAGCATGTGTATTGACTCTGACAATGGACCAGGGTACCTCTGTAAATGCTCACAAGGTTATGTGGGAAATGCTTACCTTCCTGGTGGATGCCAAGATATTGATGAGTGTGCCAATCCAAGTCTAAATGATTGTTCAGATATCTGCATTAACTTAGCTGGCAGTTATAAATGTTCTTGTCCCAAGACGAAGAGGCACCGGGGAGATGGTAAAAAAGGTGGAAGTGGCTGTGTCTCTGATCTACAACACAGACTAAACAGGCTATTTTGTTTTGCCAATGTAGGTATTGGCATAGGCCTTTTGGTATTGTTATTGGGTAGTGGCTGGCTATACCTTGTGGTCCGTAAAAGAAAACGAATGAGGCTCACAGAAAGATATTTTAAGCAAAATGGTGGCTTGATGTTACAGAAGCAAGTTTCCAACATAGAAGGATCAACTGATCAGACAGTCAAAATTTTTACTGCACAAGAGCTAAAGAAAGCCACTGAAAACTTTCATGAGAGCAGAATCATTGGCAGAGGAGGATATGGTACAGTTTATAAGGGAATACTTCCAAATGACCAAGTTGTTGCTATAAAGAAATCCAAACTAATAGACCACAGCCAAATTGAGCAATTCATCAATGAAGTGGTTGTACTTTCCCAAATTAACCACAGAAATGTGGTCAAACTCCTAGGTTGTTGTTTAGAGACAGAAATGCCATTGCTAGTTTATGAATTTGTGAACAATGGCACCCTCTTTGACCACATCCACAATGAAAACAATGCAGAAGCCACCACCACCACACTTTCTTGGGAAACAAGACTAAGAATAGCAACAGAAACAGCAGGTGTGCTTTCATACCTACATTCTGCTGCTTCCACACCAATCATCCATAGGGACTTCAAGTCAACTAACATACTCTTAGATGACAAATACACTGCAAAAGTTTCTGACTTTGGGACCTCAAGATTGATTCCACGTGACAAATGTCAATTGACAACATTGGTTCAGGGAACTCTTGGATACCTTGACCCTGAATACTTCCAAACTAGTCAACTAACTGAGAAAAGTGATGTGTATAGCTTTGGTGTTGTACTTGCCGAGTTGCTAACAGGAAGAAGGGCACTTTCTTTTGACAAGCCAGAGGCAGAGAGAAATTTAGCCATGTATTTCCTTTCAGCTTTGAAAAATGATTGCTTGTTTCAAATTCTTGAGGATTGTGTCAGTAATGAGGGAAATAGGGAGCAGGTGAAGGAAGTTGCTAATATTGCTGAATGGTGCTTGAAACTTAGAGGTGAGGAAAGACCCACCATGAAGGAAGTGGTCATGGAATTGGATAGTCTGAGAATGATGGCTACTACTCCACGGACTAATACCCCATCAAATGCAACAGAATATGGAATTGGTGAAAGATCAGCTCTAAAAGATTGTACTGGTAGTCATAGTCATTATACCAATGCTACATGTGTTGGGCATGAGGATGACACCATTTGCAATGACGTGATGTCACCCCTATGGGATGGCAGATGA 2271 0.4025 MASSQKAVLVPWLLLMISAVSQTIHPRCHNKCGSVNIPYPFGTSEDCYLNNNFYVACNTSYYPPKPFLWNLTSNIEILLVSLDGHLRINSFVAYVCHDENDMHVDTGRASMSLQAFPFSVTRNKFIGIGCDTLSVINATIGKNYSTGGCFSLCSSIDNSANGSCFGIGCCQTSIPKNILKYEAYVLSSNKMQRDVNNPCSYSLLVEEDSFNFSKADFINLQNRRTAPTVLDWSVGNQTCEEAKKNLILYACQANSMCIDSDNGPGYLCKCSQGYVGNAYLPGGCQDIDECANPSLNDCSDICINLAGSYKCSCPKTKRHRGDGKKGGSGCVSDLQHRLNRLFCFANVGIGIGLLVLLLGSGWLYLVVRKRKRMRLTERYFKQNGGLMLQKQVSNIEGSTDQTVKIFTAQELKKATENFHESRIIGRGGYGTVYKGILPNDQVVAIKKSKLIDHSQIEQFINEVVVLSQINHRNVVKLLGCCLETEMPLLVYEFVNNGTLFDHIHNENNAEATTTTLSWETRLRIATETAGVLSYLHSAASTPIIHRDFKSTNILLDDKYTAKVSDFGTSRLIPRDKCQLTTLVQGTLGYLDPEYFQTSQLTEKSDVYSFGVVLAELLTGRRALSFDKPEAERNLAMYFLSALKNDCLFQILEDCVSNEGNREQVKEVANIAEWCLKLRGEERPTMKEVVMELDSLRMMATTPRTNTPSNATEYGIGERSALKDCTGSHSHYTNATCVGHEDDTICNDVMSPLWDGR. 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02411 756 SUPERFAMILY Protein kinase-like (PK-like) 404 706 IPR011009 -
Seca4g02411 756 ProSitePatterns Protein kinases ATP-binding region signature. 424 447 IPR017441 GO:0005524
Seca4g02411 756 ProSiteProfiles Protein kinase domain profile. 418 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02411 756 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 21 701 IPR045274 GO:0007166
Seca4g02411 756 FunFam Wall-associated receptor kinase 2 494 714 - -
Seca4g02411 756 CDD EGF_CA 286 314 - -
Seca4g02411 756 CDD STKc_IRAK 424 695 - -
Seca4g02411 756 FunFam Wall-associated receptor kinase 2 237 288 - -
Seca4g02411 756 Gene3D Laminin 289 325 - -
Seca4g02411 756 ProSitePatterns Calcium-binding EGF-like domain signature. 286 311 IPR018097 GO:0005509
Seca4g02411 756 Pfam Protein kinase domain 418 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02411 756 SMART egfca_6 286 331 IPR001881 GO:0005509
Seca4g02411 756 SUPERFAMILY EGF/Laminin 285 321 - -
Seca4g02411 756 Gene3D Laminin 236 288 - -
Seca4g02411 756 ProSitePatterns Serine/Threonine protein kinases active-site signature. 543 555 IPR008271 GO:0004672|GO:0006468
Seca4g02411 756 FunFam Wall-associated receptor kinase 2 387 493 - -
Seca4g02411 756 Pfam Calcium-binding EGF domain 286 316 IPR001881 GO:0005509
Seca4g02411 756 Gene3D Phosphorylase Kinase; domain 1 382 493 - -
Seca4g02411 756 Gene3D Transferase(Phosphotransferase) domain 1 494 712 - -
Seca4g02411 756 SMART egf_5 289 331 IPR000742 -
Seca4g02411 756 SMART egf_5 238 285 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02411 Seca-Chr4 41221688 41224533 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02411 25 700 Receptor kinase-like Gene Family AT1G21230 47.889 0.0 583
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Seca4g02411 Pkinase 5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02411 - - gmx:100797492 1193.72