Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02394 ATGGGCACCGAGAATGGAGTAAGCAATGGTGATAACACTGAATGTGCTGAACAAGTTCAGCGTTTGAAAAGCGTAGCACTTCATAATGGGGTGGCAATTGCAGATGGGAATTATGTTACTGAAGAAGCTCAGCACTTGAACAGTAAAGCAAAGAATAATGGGGTCGCTTTTGCTGATGGAAATGGTGTTACTCAAGAGGCTGGACTCTTGAAAAGTGAAGCCGTTAGTAATGGTGGGGTGGCAATGGCAGTTTCTGCCGACGGGGACTTTGGTGGACTTGATTGTTTACGAACTTATAAGAGGCGTAAGCATGTAAAGTCAAGTTCAAAAAGCAAAGTTCAGGGCAGTTACATAGAACGTGTGGAAGCTGCAGCTGCAAGTCATATAGCAAACCAGGTTGTAAAGGAACCCTGTGATGTAGCTTTAGGCAATGCAGCAGATAATTATTCCCATCGACATTGGGGAAAAGTTGTACTAAAGCATCTATATCAGTCATTAGGTGATGGCAATGGCGGCATTGAGGGGTGCATAAGGGAAGCACTAATTCATCATCCTAAAATTAGTTGTGCAACTACACTTACGGAAGCTTTTAAAATTGATAAAGATGGACAAGAGTGCTCTTCACAGTTTGATTGTTTGTCTCATAGAACACGGAATGAAGCCAATGGGCATGCAAATGTCATGCGTAGGGGATGTTCTAGTGAACCAAATGGCCATGGTGTGACTGAGATGTCTCAGCGTGTGCTCTGTAATATCTTAACCTCTGAAAAATTCAGTTCATTATGTAAGGTTTTACTTGAAAACTTTCAAGGAATGAAGCCTGAAAATGTATTTGACTTTAGTGTCATGAACTCAAGGATGAAGGAGCAAGCTTATGAACAATCACCAACACTTTTCTTGTCAGATATTCAACAGGTTTGGAGAAAGCTTCAAAACGCTGGTAATGAGATTGTTGCTCTTACCAAGAGCCTCTCCAACATGTCAAGAATTTCCTACTGTGAGCTGGTGGGAATTTCAGCTGAGGGCACATATGAAGATGAAAAGCAAGTGTTCTTTAACCGGGAATCTGACTCTCACATGAAACCAGAGCAGACAGAAGAATGTGCTACCTATAAAATTTGCAGTTGCAGGCATTGTGGAGACAAGGCAGACGGCACAGACTGTTTGGTTTGTGATTCATGTGAGGAGATGTACCATTTGTCCTGTATCCAGCCTCCAGTGAGAGAAATACCCCACAAAAGCTGGTATTGTGCCAATTGTACTGCAAGTGGCATTGGATCTCCGCATGAGGATTGTGTGGTATGTGAAAGGTTGAATGATGCAAAGACCCTGGACAATATAGTTGGTGATGAAAGCTTCCCTATGAATGAGGAAGCACTACATGAATTTGAAGAGAATTCAAATTGCACCTATGATGGGATTCAAGTATCCATAGGTGGGAAAGAAACACCCAATTGCAAAATGTGTGGAGATAAAGTGGATTGTGAAAAAATTAAAATATGTGGTCACCCTTTTTGCTCCAGTAAGTATTACCATGTAAGGTGTTTGACAAGTAAGCAGTTAAAGTCATATGGTCGCTGTTGGTACTGCCCTTCTTGTTTATGCGGGATTTGCCTCACTGATCGAGATGATGATCAGATTGTACTCTGTGATGGATGTGATCATGCATATCACACCTATTGCATGAAACCTCCACGAACTTCTATTCCAAAGGGGAAATGGTTCTGCAAAAAATGTGATGCTGGAATCAAAGCAATACGCCGGGCAAAAAAGGCACATGAGAGTAACAAGCCAAGAACAGGCGAAGATGTTTCAAAGCTAAATGCCAATCTTGAAAAGAAATGCAACAATAAAGGTGTACAAGAATTGGAAAGGGGTGGAGGAATGGACATGCTTTTAACTGCAGCCAATACTCTTAATTTTGAAGAGAACTTGGCTGCAACCCAGACTGAGTCACGGAGAACATGA 1968 0.4182 MGTENGVSNGDNTECAEQVQRLKSVALHNGVAIADGNYVTEEAQHLNSKAKNNGVAFADGNGVTQEAGLLKSEAVSNGGVAMAVSADGDFGGLDCLRTYKRRKHVKSSSKSKVQGSYIERVEAAAASHIANQVVKEPCDVALGNAADNYSHRHWGKVVLKHLYQSLGDGNGGIEGCIREALIHHPKISCATTLTEAFKIDKDGQECSSQFDCLSHRTRNEANGHANVMRRGCSSEPNGHGVTEMSQRVLCNILTSEKFSSLCKVLLENFQGMKPENVFDFSVMNSRMKEQAYEQSPTLFLSDIQQVWRKLQNAGNEIVALTKSLSNMSRISYCELVGISAEGTYEDEKQVFFNRESDSHMKPEQTEECATYKICSCRHCGDKADGTDCLVCDSCEEMYHLSCIQPPVREIPHKSWYCANCTASGIGSPHEDCVVCERLNDAKTLDNIVGDESFPMNEEALHEFEENSNCTYDGIQVSIGGKETPNCKMCGDKVDCEKIKICGHPFCSSKYYHVRCLTSKQLKSYGRCWYCPSCLCGICLTDRDDDQIVLCDGCDHAYHTYCMKPPRTSIPKGKWFCKKCDAGIKAIRRAKKAHESNKPRTGEDVSKLNANLEKKCNNKGVQELERGGGMDMLLTAANTLNFEENLAATQTESRRT. 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02394 655 SMART PHD_3 375 421 IPR001965 -
Seca4g02394 655 SMART PHD_3 537 580 IPR001965 -
Seca4g02394 655 SMART PHD_3 485 534 IPR001965 -
Seca4g02394 655 SUPERFAMILY FYVE/PHD zinc finger 534 588 IPR011011 -
Seca4g02394 655 SUPERFAMILY FYVE/PHD zinc finger 363 421 IPR011011 -
Seca4g02394 655 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 476 585 IPR013083 -
Seca4g02394 655 PANTHER OS02G0192300 PROTEIN 290 422 - -
Seca4g02394 655 Gene3D - 266 423 - -
Seca4g02394 655 ProSiteProfiles Zinc finger PHD-type profile. 373 423 IPR019787 -
Seca4g02394 655 FunFam PHD finger protein EHD3 isoform A 263 424 - -
Seca4g02394 655 Pfam PHD-finger 376 422 IPR019787 -
Seca4g02394 655 Pfam PHD-finger 535 580 IPR019787 -
Seca4g02394 655 ProSiteProfiles Zinc finger PHD-type profile. 532 582 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02394 Seca-Chr4 40746155 40754884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02394 534 597 C2H2 Transcription Factor Family AT3G01460 48.438 4.38e-14 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca4g02394 PHD 3.1e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02394 - - gmx:100795906 913.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02394 4 40746155 40754884 Seca4g02394 4 40746155 40754884 ECH
Seca4g02394 4 40746155 40754884 Seca4g02394 4 40746155 40754884 PCT