Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02393 ATGCCCCCGCGGCGGTGCTTAGCGTCAGCGGAGATCGACAGCGATTACGACAGCGACGACGACAGACTCACGATGCGCTGCATTTCCTGCGATGAGGAGTACGACCCTGACGACGCCGGAACCTGCAAGGAGTGCTACGATGAAGCCAACGAGACCAAGGAAGAGCTCAAGCGTCAGATCCAAGACTTGAAGTCTAAGGTTTCCTTCCTCGCCCTCTCTTCTCCCCTCGACGCTCCTTCCACCACCGATCTCGTCCTCGTTCCCTCCGCTGACGCTTCCGCTCCCTCCGTTCCCGCTCACAAGGCCGTTCTGGTTAGTCGCTCTCCAGTTTTCAGAGCCATGCTGGAGAATGACATGGAGGAAAGCCGGAGTGGCACCATCAAGATCACTGATGTATCATATGATGCTCTTCGTGCTTTTGTTAATTATTTATACACTGCTGAGGCATGCCTTGATAACCAAATGGCCTGTAACCTATTGGTTTTAGCAGAAAAGTATCAGGTGAAACATCTTAAGATATATTGTGAGAAGTATTTGATCGCCAAACTGAATTGGGAAAAAGCTATTGCAAACTATGCCTTTGCACATCAACACAATGCGAACCAATTGCTAGATGCAGCCTTGGCAGTGATCATAGACAACATGGACCGCCTCACTAAAAATGAAGATTATATGGAGCTGGTGGACAGTAATCCTCGTCTTGTTGTGGAAATTTATGAAGCATATCTTGCCAAACAGGTTAATACTGCAGCTACACTTAGGCAATAG 768 0.487 MPPRRCLASAEIDSDYDSDDDRLTMRCISCDEEYDPDDAGTCKECYDEANETKEELKRQIQDLKSKVSFLALSSPLDAPSTTDLVLVPSADASAPSVPAHKAVLVSRSPVFRAMLENDMEESRSGTIKITDVSYDALRAFVNYLYTAEACLDNQMACNLLVLAEKYQVKHLKIYCEKYLIAKLNWEKAIANYAFAHQHNANQLLDAALAVIIDNMDRLTKNEDYMELVDSNPRLVVEIYEAYLAKQVNTAATLRQ. 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02393 255 Pfam BTB/POZ domain 77 182 IPR000210 GO:0005515
Seca4g02393 255 CDD BACK 192 227 - -
Seca4g02393 255 Gene3D Potassium Channel Kv1.1; Chain A 48 184 IPR011333 -
Seca4g02393 255 ProSiteProfiles BTB domain profile. 82 153 IPR000210 GO:0005515
Seca4g02393 255 SUPERFAMILY POZ domain 80 180 IPR011333 -
Seca4g02393 255 Gene3D - 185 255 - -
Seca4g02393 255 SMART BTB_4 82 183 IPR000210 GO:0005515
Seca4g02393 255 PANTHER SPECKLE-TYPE POZ PROTEIN 44 248 - -
Seca4g02393 255 CDD BTB_POZ_ZBTB_KLHL-like 96 166 - -
Seca4g02393 255 Coils Coil 42 73 - -
Seca4g02393 255 FunFam BTB/POZ domain-containing protein 185 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02393 Seca-Chr4 40710530 40713025 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Seca4g02393 BTB 8.9e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02393 K10523 - gmx:100794118 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02393 4 40710530 40713025 Seca4g02393 4 40710530 40713025 ECH