Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02389 ATGCAGCATACGGGTCCGGTCGGAGAACCCACCGGAGGAAGTTCCGGTGTCCGGACGGTGGTGGTGGGGGTGAAGCTGGACTCCCCTAGCAAAGAGCTTCTCACGTGGGCTTTGGTTAAAGTTGCTCACCCTGGTGACACTGTCGTTGCTCTGCATGTTCTCGGGAACCATGGAATTGTGAATGGAGATAGGAAATCGTCTCTGCTTGGGCTTGTCAAGGCATTTGACTCTGTTCTTGCTGTTTATGAAGGATTCTGCAATTTGAAACAGGTGGGTCTGAAGCTCAAAGTTTGCCGTGGTTCATCAGTGAAGAAAATTTTGGTTCGAGAAGCAAATACTTATTCTGCAACCCATGTTGTGGTTGGAACTGCTCAGGGCCTTCATAAAATCCGGTCATCTACCTCTGTAGCTAAGCACTGTGCTAAAAAATTATCCAAGAACTGCTGTGTTCTTGCTGTTAACAATGGGAAAATTGTTTTCAAGCGTGATAGCTTGTCATCAAATGTAGCTGAAACACAAGGGATTGATCTTCATCATAGAAATGGTTTGTTTGGTTCAATTCATTGGACTCTCAGTAAAGGCACAAAAGTACTAAGTGATGAGGGAAGTAGCCAAATTTCAGATCACAGTTTAGCTAAGGTTCTTCTGGATTCTACAGAAGAAGTTGTTAGAAAACAGAGCTGCTCAATTTGTGGTGCAACCCCTGAATTGCCAAACACTTCTAGTTCTAGCCACCAATCTGAAGAAGGGTCTTCTGGTGATGGTGGCAGTGAGAATTCTTTGGCTATGGTGCCTGTAGAGACCGCAGATGCAGGACAACCTGAATTGAAACCAGGTTGGCCGCTACTAAACCGGAGGATTTTATCAGACAGACATTCTCTTGACAGATCATTGATGTGCCACCAGATCTCTGTGGTCCAGTGGGCTATGAGGTTGCCTTGTAGAAATCTTTCATATGGTGTAGATCATGATAGAAAACCTAACATTAGTGATCAAGGTCAAGGTCAACCTGTGGCTTTAGATAGTGAAAGTGGTGCTCTTGTTCCAGTAGGTACTGAAATAGGGACAGCTTCTTTGCCTGAACGCAACTCAAGAAGTATTCCTAAAGAATTGGAGGGCCTTCATGAGAAATACTCATCAACTTGCAGATTGTTTGAGTATCAAGAACTTGTATCAGCAACATCAAATTTCTTGCCTGAAAACTTGATTGGGAAAGGAGGAAGTAGTAAGGTTTATAAAGGATGCCTTCCTGATGGCAAGGAACTTGCTGTTAAGATCCTAAAGCCTTCTGATGATGTTTTGAAGGAGTTTCTTTCGGAAATAGAGATCATCACTGCCTTGCATCACAAAAACATTATCTCCCTCCTTGGGTTCTGCTTTGAGAATGACAATCTTCTTTTGGTCTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAACCTTCACGGGAATAAGAAAAATCCATGTATGTTTGGTTGGACTGAGAGATATAAGGTAGCAATGGGTGTTGCTGAGGCTTTAGATTATCTGCATTGTAAAGATGATCAACCTGTGATCCATAGGGATGTAAAATCATCAAATGTATTATTATATGAGGATTTTGAGCCCCAGCTCTCTGATTTTGGACTGGCTAAGTGGGCATCAACGTCGTCATCACATATAACTTGCACAGATGTTGCAGGAACCTTTGGCTATTTGGCTCCTGAATACTTCATGTATGGCAAAGTAAATGAGAAGATTGATGTCTATGCATTTGGTGTTGTGCTCCTTGAGCTTCTTTCAGGGAGAAAGCCCATAAGTGGTGATTATCCAAAAGGTCAAGAGAGTCTTGTTATGTGGGCAAGTCCAATTCTAAATAGTGGAAAGGTGTCACAATTGTTTGATCCTAGTTTGGGTGATAACTATGATCATGAGGAGATGGAAAGGATGGTATTAGCAGCCACTCTCTGTATCAGACGTGCTCCAAGAGCTAGGCCTCAAATGAGCCTTGTTTGTAAGCTCCTTCAAGGTGATACTGATGCAATCAAGTGGGCAAGGATAGAAGTTAATGCTTTGGAAGCACCTGAAATGCTTGACGATGAAGCATGTCCACCTAGCAATATACAATCACATCTTAATCTGGCACTGCTTAATGTGGAGGATGACTCACTTTCCATGTGCAGTGTTGTGCAAAGTGTCTCATTGGAGGACTACTTGAGAGGCAGATGTAGCCGCTCATCAAGCTTTGACTGA 2232 0.4292 MQHTGPVGEPTGGSSGVRTVVVGVKLDSPSKELLTWALVKVAHPGDTVVALHVLGNHGIVNGDRKSSLLGLVKAFDSVLAVYEGFCNLKQVGLKLKVCRGSSVKKILVREANTYSATHVVVGTAQGLHKIRSSTSVAKHCAKKLSKNCCVLAVNNGKIVFKRDSLSSNVAETQGIDLHHRNGLFGSIHWTLSKGTKVLSDEGSSQISDHSLAKVLLDSTEEVVRKQSCSICGATPELPNTSSSSHQSEEGSSGDGGSENSLAMVPVETADAGQPELKPGWPLLNRRILSDRHSLDRSLMCHQISVVQWAMRLPCRNLSYGVDHDRKPNISDQGQGQPVALDSESGALVPVGTEIGTASLPERNSRSIPKELEGLHEKYSSTCRLFEYQELVSATSNFLPENLIGKGGSSKVYKGCLPDGKELAVKILKPSDDVLKEFLSEIEIITALHHKNIISLLGFCFENDNLLLVYDFLSRGSLEENLHGNKKNPCMFGWTERYKVAMGVAEALDYLHCKDDQPVIHRDVKSSNVLLYEDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKVNEKIDVYAFGVVLLELLSGRKPISGDYPKGQESLVMWASPILNSGKVSQLFDPSLGDNYDHEEMERMVLAATLCIRRAPRARPQMSLVCKLLQGDTDAIKWARIEVNALEAPEMLDDEACPPSNIQSHLNLALLNVEDDSLSMCSVVQSVSLEDYLRGRCSRSSSFD. 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02389 743 ProSiteProfiles Protein kinase domain profile. 397 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02389 743 ProSitePatterns Serine/Threonine protein kinases active-site signature. 518 530 IPR008271 GO:0004672|GO:0006468
Seca4g02389 743 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 17 154 - -
Seca4g02389 743 Gene3D Transferase(Phosphotransferase) domain 1 472 683 - -
Seca4g02389 743 CDD STKc_IRAK 403 670 - -
Seca4g02389 743 Pfam Universal stress protein family 18 149 IPR006016 -
Seca4g02389 743 CDD USP_Like 19 153 - -
Seca4g02389 743 Pfam Protein kinase domain 401 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02389 743 MobiDBLite consensus disorder prediction 234 260 - -
Seca4g02389 743 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 366 471 - -
Seca4g02389 743 Gene3D Phosphorylase Kinase; domain 1 362 471 - -
Seca4g02389 743 Gene3D HUPs 16 155 IPR014729 -
Seca4g02389 743 FunFam Putative receptor-like serine/threonine-protein kinase 472 684 - -
Seca4g02389 743 SMART serkin_6 397 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02389 743 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 157 - -
Seca4g02389 743 PANTHER OS08G0249100 PROTEIN 79 680 IPR046958 -
Seca4g02389 743 ProSitePatterns Protein kinases ATP-binding region signature. 403 425 IPR017441 GO:0005524
Seca4g02389 743 MobiDBLite consensus disorder prediction 234 258 - -
Seca4g02389 743 SUPERFAMILY Protein kinase-like (PK-like) 378 668 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02389 Seca-Chr4 40638586 40642424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02389 384 664 Trihelix Transcription Factor Family AT1G68690 47.552 1.52e-78 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca4g02389 Pkinase 6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02389 - - pcin:129303222 1048.88