Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02388 ATGCAGCTATATCATCATCCATTTGATCTGGACAGCCAGAAGGTGAGACTTGCTTTGGAAGAGAAAGGCATTGATTATACATCTCACCATGTCAATCCCATAACTGGCAAGAACTTGGATTCCTCATTCTTCAAGATGAATCCCAGTGGAAGACTCCCTGTTTTCCAAAATGGCTCTCACATCATTTACAAGCCTATTGATATAATCCAGTACATAGAAAGAATTGCTGTGATATCCTCAGGGTCTGAGGTTATCAGTACTAGTAGTAGGGAAGTGATTGAATGGATGCAGAAGATACAAGAGTGGGATCCTAGGTTTTTTACCCTTTCCCATATACCAGAGAAATACCGGATTTATGTTTCCAAGTTCATAAGGCAGGTGTTGATAGCTCGTATGTCTGAGTCCCCTGAATTAGCAGGTGCTTACCATAAGAAGTTAAGAGAAGCCTATCAAACTGAAGAAAAATTGAAAGACCCAGATGTTTTGAGAAGGAGCAAGGAGCATTTGGTTAGACTGCTAGATGAAGCAGAGAGGCAGCTAAGTGAAACACCTTATTTAGCAGGTGAAGAGTTTACCATGGCTGATGTAATGCTCATTCCAATGTTGGCTCGTTTAGTACTCTTGGATTTAGAGAATGATTACATAACTAGCAGGCCAAACATTGCTGAGTATTGGGTTATGGTTCAGCAGAGGCCTAGTTATAGAAAGGTGATTGCTAAGCATTTTGATGGTTGGAGAAAGCACAAAACATTATTTAAAACTTGGTGTTTTGTTCGGATTAGAAGTTTGCTGAAGAGGTACTAG 804 0.4017 MQLYHHPFDLDSQKVRLALEEKGIDYTSHHVNPITGKNLDSSFFKMNPSGRLPVFQNGSHIIYKPIDIIQYIERIAVISSGSEVISTSSREVIEWMQKIQEWDPRFFTLSHIPEKYRIYVSKFIRQVLIARMSESPELAGAYHKKLREAYQTEEKLKDPDVLRRSKEHLVRLLDEAERQLSETPYLAGEEFTMADVMLIPMLARLVLLDLENDYITSRPNIAEYWVMVQQRPSYRKVIAKHFDGWRKHKTLFKTWCFVRIRSLLKRY. 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02388 267 CDD GST_N_family 1 73 - -
Seca4g02388 267 Gene3D Glutaredoxin 1 75 - -
Seca4g02388 267 Gene3D - 135 238 - -
Seca4g02388 267 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 80 IPR004045 -
Seca4g02388 267 SFLD Glutathione Transferase (cytosolic) 1 231 IPR040079 -
Seca4g02388 267 PANTHER GLUTATHIONE S-TRANSFERASE TCHQD 1 267 IPR044617 GO:0004364
Seca4g02388 267 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 92 252 IPR010987 -
Seca4g02388 267 Pfam Glutathione S-transferase, C-terminal domain 161 224 - -
Seca4g02388 267 SUPERFAMILY Thioredoxin-like 1 74 IPR036249 -
Seca4g02388 267 SFLD Main (cytGST) 1 231 - -
Seca4g02388 267 SUPERFAMILY GST C-terminal domain-like 146 241 IPR036282 -
Seca4g02388 267 CDD GST_C_family 147 225 - -
Seca4g02388 267 Pfam Glutathione S-transferase, N-terminal domain 1 74 IPR004045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02388 Seca-Chr4 40594870 40596936 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02388 1 267 Glutathione S-transferase Gene Family AT1G77290 68.914 5.16e-143 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02388 K22077 - gmx:100792543 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02388 4 40594870 40596936 Seca4g02388 4 40594870 40596936 ECH
Seca4g02388 4 40594870 40596936 Seca4g02388 4 40594870 40596936 PCT