Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02387 ATGGGCTCGTGTGGGGAATCTGCTATCGATGACGATTCCTTAGGAGGGTCTGTTATTGAGAAACACATGTGTTCAGAGATTCCGGTACAGTTAGTTTCTGTGCAGAAGTCATGTTCAGAAGAAGCTCGCAATGTGTTGGACTCTAATGTTGACCTCTCCGATATGGCCGCTGGTTGTATAGGAGAGGGCTACGAGGGTTCTGCAAGCTTTGTTGATGTTACTGAGGGGTCTAGAGATGTTTTGGCAAATGAATGTGAAAATGCTGATGTGTCGCGATTGGAGAAAACTGCTGAAGATGATTGTCAGAATTGTTTGGGGATTTGTTGTGAGGACATTGAAGTTTCCTGTCTAAAAGGTGGTGGGTTGAGCTCAGAAGGAAATTTTCAAGATGAAGGCACCACAGCCACAAATAGTTTGCAGAAGCATTGTGCTCAACAGGGTGAGCAGAAGGATGATAGGAGCAACATCTTATTATCTGCAGGAGATGGTTCAGGAGTCATGGAAGGAAAAGATGATGACACTGGTTTACTCACTGATGCTTTCAATTGTGCGCTTGATTCCAGGCATTCTGAAATGTCTTTGGAACCAGAATCCATGGCTGACTTGCTAGTTGATTGCAACCCTCAAAATGAACCAGAGGAGATTATGAGAAATGCAGATGCCTTGTCGAAGGTTGTGGAAAAATGTAATGCTTTAGATGGGATGGAAGCCAATGCTTGCAGGCAGATGTCTCCTTCACAGGGTATGGAAGTGCTGTCAGGTGCATTATGTACAGATACAGAAGTGAAGAGCACAGGTGATGAGCTATGTGATCAGAAAGAGGGTGAGGATTGGAATAGTACCTGTGAAGAAAGGGTTAAAGCTGTTATTGATAAAGAAATAACTATTGATTCAGATGTACAAGTATCATTCTCACAAGGTTGCCATAGGACCTTGGGGAGATCACCTGTAGTTGATTCACTTTGTGAGCCTACCTTGCTGGATCCGGGGAATGAAATGAAAAATGGTATACTGCAAATAGAAGATAACTTCTGTAAATTGAAGGACTGTTCCGCAGAGGGACCTGCCGACTCTACCTTTAATAAACCATTTTATCCAGAATCAGGTCATCCCTCAGTTGTTTCAATCACCAATAGTTCTTCAAAGGATGTACCTGATCTCCTTTATAAGGGTGATGATGTTTCCATCAATAATAATAGTGCTGTGGACAATTCTGGACAGACAAATAATGATGGAAAAGAAGCTGTTGAAGTTGATTGCATCACTGAAAGCATACAGTTACCTTCTCAAAGGAATAGTCGAAGAACCAAATTTGGTTGCAAGACACAAACCAAAAAGCCTTCAAGAAAATGTAAGAACAAAGCCAGTGTGACACATCCAGGTGGGGGTATGAAGATAAATTTAGAGGCTTCTAGAAAGAAAAGAAGTTGTTTATCCAAACCAGCTCGTTCTTCTATCTGGGGTTTGCTTGGAAACATTAAACAGTTTTTTCAGCAAGATAATGAGATAGAAGTCAGTGAAGCCATGTGCCGGGAATTGGGGAAGGCTAGAAGCAAGCGTCAAAGTGGGAAAGCGATTAAGAACAGTGCAAATTATAGCTCATTGAATTCAGTGCAGAAGTACTCTGTTTCAACTTCAACTACTCGTGTTCGTCTAAAGATCAAGTTTGGAAAAGAAATTGATTTAAGTAGCTCAAATGTCTTGATTCCAGAGGCTGTTGGTGGCTTGGCATCTGCTTCCTACTTGGGGTTTGATTTAGGTTCTCAGAAAGTAGCTAGCAATGCTGAAGATAAAATTTCTGAAGTGGTGGCTTTGGGCAATTCAGAATCTTTCAAAACTGACCTGGATAACGATGGTCTTGTTCTGAATGGACAAATTGCAAATAGCCACTTAGAAAATACTGAAATAACGGAGAAGTCAGATGGGGATACTGAGGAACCATGTCTTGAAGTTCCTCCACAGAAGGAGGTTGAAGCATTGCATAAGCCAATGAATGATAAGGCTATGGATCCTGGAACTTCACCTGATTCAGAAGTTATCAATTCAGTTCCAGAAGTCCAGGTTGGAGAAAGAAATGAAGAAGATGTACATCATGCTGTTTTAGGTTCTTCTAAGGAGTTCAATTCTAATTTGGATGTTATCATCAGTGAGAGAGGGAAGAAGAAAGACAAGCTTATTTGTTCAGGTAATTATATCACTGAAGACGGATCCCAAGGTCCAACAAAGAAAAATAGAGCTAAGCAGTCAAAGAATCGCAGACGTAAGAAGAATTGCAGTGACGTTGTTAGCTCTATGGAATTGCCTACTTCCACTGAGATAAGCAAATCAGTAAACAGTAAAGAATTGTCTACAGAATCATTGCCTCTTTCTGGAGTGATTGAACTTGGAGGCTCCACTGAGGCTTTGAAAGATAAAAGTCACATGGAAGTTGAGACAACTTGCAAACCATCTGTTGATCATGGATTTTCAGAATACCAGGGTTCTGAGAATTTGCTTTGTTCTGCAAGATCTTTGGGGCGTAAACTACCGAAAAGTCTTCAACCTAGTAAAGTTAGCAAGGCCAAACCTAAAGCTTCTGACTCGACGAGCAGGAAAAAGACAAGTTCCAGACGCAAGGAGAAACAGAAGAAGCCAATCAGTAAAAGTGAAGTCAAGGGAAAAGGTGTCTCTCTTAAAGTTAAATGTGAAGTGGAAGACCACCCACATCCAGCAGATGTAGTTGGAAATCATAAGGTGGATGCTGTTGGAAAAAATAATGCCAGTGACAACAGAGTATCAGTCAATGTATCTAATTTGGACATGTTGCCTGGTGTTGGTTTGGGAGAGCAACATCTATCAACACATAGTGCATGGGTGCGTTGTGATGATTGTCACAAGTGGCGGCGTATTCCAGCTGTGCTTGCAGACCTGATTGATGAAACTAACCGCACCTGGACATGTAAGGACAGCAGTGATAAAGAGTTTGCTGATTGTAGTATCCCTCAAGAAAAGTCAAATGCAGAGATTAATGCAGAATTGGGATTATCAGATGCCTCTGGTGAAGAAGATGTGTATGAAGACTCGAAAAATTACAAGGAATTGGGATATCGCCGACCATTTGTTTCTCAGGAGTCAACTTTTACCCGTATTTTCACCAATGAGTTTCTGCATCGTAATCGTAAAACTCAGACTATTGATGAGATAATGGTCTGCCATTGCAAGCCCCCTCAAGAAGGCAGGTTGGGCTGTGGGGATGAATGTCTAAACCGGATGCTTAACATTGAATGTGTGCAAGGAACCTGCCCATGTGGGGACTGTTGTTCCAATCAGCAGTTCCAAAAACGCAAGTATGCCAGCCTGAAGTGGTTTAAATGTGGGAAAAAAGGTTATGGACTGAAGGCAGTTGAGGATGTAGCTAAAGGACAGTTTCTTATTGAATACGTTGGAGAGGTGCTTGATATGCAAGCTTATGAGGCACGACAGAGAGAGTATGCTTTGAAGGGTCATAGACATTTCTATTTTATGACCTTGAATGGGAGTGAGGTTGTCCTTGTTTTGAGTTTGACTTTTTGTCCTGATAGCAGTGAGATGGAAAAATTGGTGATAGATGCGAGTGCAAAAGGAAACTTGGGGCGTTTCATTAATCATAGTTGTGATCCTAATTGTCGGACAGAAAAGTGGATGGTGAATGGGGAAATCTGTATTGGACTGTTTGCATTGAGGGATATTAAGCAGGGTGAAGAATTGACATTTGATTACAACTATGTAAGGGTTTTTGGTGCTGCTGCCAAAAAATGTTATTGTGGTTCACCTCATTGTCGAGGTTATATAGGTGGTGGTGATCCACTCAATGCTGAACTGATAGTTCAAGGTGATTCAGATGAAGAATTTCCAGAACCTGTGATGCTTAATAGAGATGGTGGCATTGAGGACAGTGTGCCTATACCTGAATACTTTGATAATGTTGATACACTGTCTTCTAAGTATTTGTTAAAAGACAGGGATGTATTGGACAAGTCTACAACTGCTACAGATGCAAATGGTTCTCCAGAGAAAGAGAGCTCTATGAACCCTGCCTCTGCTGTTTCCCTGTTGCACAGCTCAGTAGAAGTTAATGACTCAAAGGGCAAGTTACCATCTTCTGTTCGAACAGAAGAAATTTCTCTCCAAATGGAGGATATAACAAGCAAACACATGGCTGCTGATCAACAAAGATATGCAATGGAGTCAGAGTCTGCAGACAAAACTTCCTCCCTTACAACTGTCAGCAAAGTGTTATCGAATTCTACGGGTAGTGATAAAGAATCCAAGTCTGAAATAATTGAAGGCAGGAATGATTTTTCACAAACACACCTGCATGTGAAGACTCCAAAACTAAATGGTTCTGTTAAAAAGGGAAAATTTCGTGCTAATCCTCCGGATGGTCTTAAAGCTGAGGTGACAGCCAACCGATTGCAGGTGTCATCTATCAAAAACAAAAAAGTAGAAGGTTCTTCCAATGGGAGGTTTGAAGCAGTTCAGGAGAAACTTAATGAGTTGCTGGATGGAGATGGGGGAATAAGCAAAAGAAAAGATGCCACCAAAGGCTACTTAAAGCTTTTGCTTCTTACTGTGGCATCTGGTGATAGAAGCAATGGTGAAGCAATTCAGAGCAATCGAGATCTTTCCATGATTCTTGGTGCCCTTCTGAAAACAAAATCTAGAGCAGTGCTGAATGATATAATTAACAAAAATGGTTTACAGATGTTACATAACATAATGAAGCAGTACAGGCAGGACTTCAAAAAAATCCCGATACTACGGAAGCTTCTTAAGGTCTTAGAGTACCTAGCAGCAAGCAAGATATTGACATCTGAACATATCAATGGTGGTCCTCCTTGTCATGGAATGGAGAGCTTTCGGGAGTCAATGCTGTCTCTGACAGAGCATGATGACAAACAGGTCCATCAAATTGCTCGAAGCTTCCGAGACAGATGGATTCCCAGAACTGTCAGAAAACATGGCTATATGGACAGGGATGATAATAGGGTGGAATCTCACAGAAGTTTCAACTGTAACAGATTTTCAGCATCACACAATCATAGGCATGAGCAGGATTCAAGACCTACAGAAGCAATTGATTGTGGTCAGCAGTCAATGGTTGTGACAACTTCAGTAGATGCTGCTGCCCCGGAGGGCTGCTCTACACTGTCTATAGATAGGATTGAAATCAAAGGGACCAAAAAACGTAAGCGCAAAAGCCGATGGGATCAACCAGCAGAAACAAATTCACATTCTGATGCAGTTATTAGTTCTACTGATGAAAGCCAGAACATTCATGAAGATGTTCCACCAGGATTTTCATGTCCAATACGTTCATTAAATGCTTCACTAAACTCTGGTGATCCTGCTTTGCAGAATGCAAGCCATTCTGGATGTCCCTCTGATTTAGTTATTGGTCATCCAAAAGAGAAATTTAACTCTCGCTTGCCTGTCTCATATGGAATGCCATGGTCTGTTGTCCAGCAATATGGAACACCGCATGCTGAAATCACAGGGTGTTGGGTCACTGCGCCTGGCATACCTTTCAACCCATTTCCCCCCCTACCCCCATATCCACGGGATGACAAAGACTGTCAACCTTCTAATACTACTAATGCCATGGCAATTGACAAGCCTGCTGAAGTTCAGCAGTGTGATACTAGTGGTCTGGTTAATTGCTGCTCAGATGATATGATTCCTAGCACAACTGGTGCTAACCCTGAAGACATGAACCTTCCATGTGAGGACAATAAACATGATACTAAACGATTGAAGGATGACTCCAATGATTTGGGAAGGAGGTACTTTAGACAGCAGAAATGGAATAACTCAAAAATACATCGACCATGGTTTAGGAGGAATGGATCGAAAGGTAATGGGAACAACTCTAATGGTGAGATGTGCAGTATAGATGTAGGAGATGTACCAAAAGAGTCAAAAGTTACTTGTTTTTCGGAGGATGCAATCTGTAGAGATGAGAAAGATGGCAATAATATTTATTAG 6003 0.4155 MGSCGESAIDDDSLGGSVIEKHMCSEIPVQLVSVQKSCSEEARNVLDSNVDLSDMAAGCIGEGYEGSASFVDVTEGSRDVLANECENADVSRLEKTAEDDCQNCLGICCEDIEVSCLKGGGLSSEGNFQDEGTTATNSLQKHCAQQGEQKDDRSNILLSAGDGSGVMEGKDDDTGLLTDAFNCALDSRHSEMSLEPESMADLLVDCNPQNEPEEIMRNADALSKVVEKCNALDGMEANACRQMSPSQGMEVLSGALCTDTEVKSTGDELCDQKEGEDWNSTCEERVKAVIDKEITIDSDVQVSFSQGCHRTLGRSPVVDSLCEPTLLDPGNEMKNGILQIEDNFCKLKDCSAEGPADSTFNKPFYPESGHPSVVSITNSSSKDVPDLLYKGDDVSINNNSAVDNSGQTNNDGKEAVEVDCITESIQLPSQRNSRRTKFGCKTQTKKPSRKCKNKASVTHPGGGMKINLEASRKKRSCLSKPARSSIWGLLGNIKQFFQQDNEIEVSEAMCRELGKARSKRQSGKAIKNSANYSSLNSVQKYSVSTSTTRVRLKIKFGKEIDLSSSNVLIPEAVGGLASASYLGFDLGSQKVASNAEDKISEVVALGNSESFKTDLDNDGLVLNGQIANSHLENTEITEKSDGDTEEPCLEVPPQKEVEALHKPMNDKAMDPGTSPDSEVINSVPEVQVGERNEEDVHHAVLGSSKEFNSNLDVIISERGKKKDKLICSGNYITEDGSQGPTKKNRAKQSKNRRRKKNCSDVVSSMELPTSTEISKSVNSKELSTESLPLSGVIELGGSTEALKDKSHMEVETTCKPSVDHGFSEYQGSENLLCSARSLGRKLPKSLQPSKVSKAKPKASDSTSRKKTSSRRKEKQKKPISKSEVKGKGVSLKVKCEVEDHPHPADVVGNHKVDAVGKNNASDNRVSVNVSNLDMLPGVGLGEQHLSTHSAWVRCDDCHKWRRIPAVLADLIDETNRTWTCKDSSDKEFADCSIPQEKSNAEINAELGLSDASGEEDVYEDSKNYKELGYRRPFVSQESTFTRIFTNEFLHRNRKTQTIDEIMVCHCKPPQEGRLGCGDECLNRMLNIECVQGTCPCGDCCSNQQFQKRKYASLKWFKCGKKGYGLKAVEDVAKGQFLIEYVGEVLDMQAYEARQREYALKGHRHFYFMTLNGSEVVLVLSLTFCPDSSEMEKLVIDASAKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRDIKQGEELTFDYNYVRVFGAAAKKCYCGSPHCRGYIGGGDPLNAELIVQGDSDEEFPEPVMLNRDGGIEDSVPIPEYFDNVDTLSSKYLLKDRDVLDKSTTATDANGSPEKESSMNPASAVSLLHSSVEVNDSKGKLPSSVRTEEISLQMEDITSKHMAADQQRYAMESESADKTSSLTTVSKVLSNSTGSDKESKSEIIEGRNDFSQTHLHVKTPKLNGSVKKGKFRANPPDGLKAEVTANRLQVSSIKNKKVEGSSNGRFEAVQEKLNELLDGDGGISKRKDATKGYLKLLLLTVASGDRSNGEAIQSNRDLSMILGALLKTKSRAVLNDIINKNGLQMLHNIMKQYRQDFKKIPILRKLLKVLEYLAASKILTSEHINGGPPCHGMESFRESMLSLTEHDDKQVHQIARSFRDRWIPRTVRKHGYMDRDDNRVESHRSFNCNRFSASHNHRHEQDSRPTEAIDCGQQSMVVTTSVDAAAPEGCSTLSIDRIEIKGTKKRKRKSRWDQPAETNSHSDAVISSTDESQNIHEDVPPGFSCPIRSLNASLNSGDPALQNASHSGCPSDLVIGHPKEKFNSRLPVSYGMPWSVVQQYGTPHAEITGCWVTAPGIPFNPFPPLPPYPRDDKDCQPSNTTNAMAIDKPAEVQQCDTSGLVNCCSDDMIPSTTGANPEDMNLPCEDNKHDTKRLKDDSNDLGRRYFRQQKWNNSKIHRPWFRRNGSKGNGNNSNGEMCSIDVGDVPKESKVTCFSEDAICRDEKDGNNIY. 2001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02387 2000 CDD SET_SETD2 1110 1271 IPR044437 GO:0010452|GO:0046975
Seca4g02387 2000 SUPERFAMILY SET domain 1042 1268 IPR046341 -
Seca4g02387 2000 ProSiteProfiles Zinc finger CW-type profile. 945 999 IPR011124 GO:0008270
Seca4g02387 2000 FunFam Histone-lysine N-methyltransferase 943 1004 - -
Seca4g02387 2000 SMART shorttest3 1059 1110 IPR006560 GO:0005634|GO:0042054
Seca4g02387 2000 ProSiteProfiles SET domain profile. 1111 1247 IPR001214 GO:0005515
Seca4g02387 2000 MobiDBLite consensus disorder prediction 762 785 - -
Seca4g02387 2000 MobiDBLite consensus disorder prediction 1747 1765 - -
Seca4g02387 2000 Gene3D - 949 1007 - -
Seca4g02387 2000 MobiDBLite consensus disorder prediction 1912 1927 - -
Seca4g02387 2000 Pfam SET domain 1122 1247 IPR001214 GO:0005515
Seca4g02387 2000 Gene3D SET domain 1008 1279 IPR046341 -
Seca4g02387 2000 ProSiteProfiles Post-SET domain profile. 1255 1271 IPR003616 -
Seca4g02387 2000 SMART set_7 1111 1253 IPR001214 GO:0005515
Seca4g02387 2000 Pfam CW-type Zinc Finger 951 997 IPR011124 GO:0008270
Seca4g02387 2000 MobiDBLite consensus disorder prediction 1732 1772 - -
Seca4g02387 2000 MobiDBLite consensus disorder prediction 438 453 - -
Seca4g02387 2000 MobiDBLite consensus disorder prediction 731 785 - -
Seca4g02387 2000 MobiDBLite consensus disorder prediction 128 156 - -
Seca4g02387 2000 MobiDBLite consensus disorder prediction 843 887 - -
Seca4g02387 2000 MobiDBLite consensus disorder prediction 1902 1927 - -
Seca4g02387 2000 Pfam AWS domain 1074 1108 IPR006560 GO:0005634|GO:0042054
Seca4g02387 2000 SMART PostSET_3 1255 1271 IPR003616 -
Seca4g02387 2000 PANTHER SET DOMAIN PROTEINS 448 1748 - -
Seca4g02387 2000 MobiDBLite consensus disorder prediction 1334 1353 - -
Seca4g02387 2000 ProSiteProfiles AWS domain profile. 1059 1109 IPR006560 GO:0005634|GO:0042054
Seca4g02387 2000 MobiDBLite consensus disorder prediction 432 465 - -
Seca4g02387 2000 MobiDBLite consensus disorder prediction 128 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02387 Seca-Chr4 40578846 40593730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02387 1094 1270 C2H2 Transcription Factor Family AT2G23740 32.804 8.21e-21 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca4g02387 SET 4.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02387 - - gmx:100795379 2818.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02387 4 40578846 40593730 Seca4g02387 4 40578846 40593730 ECH