Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02362 ATGTCGAACTCTAATCGTCGTTCGTCGTTTTCTTCCTCAACGACGTCGTCTTTAGCCAAGCGCCATGCATCTTCCTCAGAGAACAACGTTGGAGGGAAGGTTTTGGCCGTTCCTACACACTCCGCCAAGAAACGACCTCCTCTCACTAATCTCACCAATCACATTGCTTCCCGCAACTCAGGAGCACCATCTTCTACTTTGGTACCATGTGCAACTAAAGTTGCAAAGACCAAGAAAGAGCCTCAGGCATGCACCACTACTAGCTCAGCAATTTCCGGCAATAAAATACCCACTTTGCCAAATGTTAAATCTACCACAGTTGTTGTTCCTAAGGTTACTTCATTCCCTGAAAGGAATGAGGATACTCCATCAGTTGCTACTGTCACTGTTCCTGTTTCAAACAGCATGGATGTTTCCCCTTGTAAATCAGATGGAATGTCGGTTTCTATGGATGAGTCAATGTCTTCTTGTGATTCTTTCAAGAGTCCTGACATTGAGTATTTGGATAACAGCGATATTTCAGCAGTGGACTCAATTGAGAGGAAGACATTCAGCATTCTGAACATCTCCGATACTAAAGAGCCAGCAGCAGGAAGTATCTGTAGTAGAGACATTCTTGTTGAGCTGGAAAAAGGGGAGAAAATTGTCAATATAGATAATGATCACATGGATCCCCAGCTCTGTGCATCCTTTGCTTGTGATATCTACAAGCATCTGCGTGCATCTGAGGCAAAGAAAAGACCTGCTAAAGACTTCATGGAGAGAATTCAGAAGGACATTAATGCCAGCATGCGTTCTATATTGATTGATTGGCTAGTGGAGGTGGCTGAAGAGTATAGACTTGTACCTGATACATTGTATTTGACAGTAAACTACATAGATCGGTATCTTTCAGGGAATGTGATGAGTAGGCAAAAGTTACAATTGCTTGGTGTTGCCTCCATGATGATTGCCTCTAAATATGAGGAAATTTGTGCACCTCAGGTGGAGGAATTTTGTTATATTACTGATAACACATACTTCAAAGAAGAGGTTTTGCAGATGGAATCCAATGTCTTGAATTTTCTCAAGTTTGAAATGACAGCCCCAACAATTAAATGTTTCTTAAGAAGATTTGTACGAGCAGCTCAAGGAGTCGACGAGGTCCCTTCAATGCAACTAGAGTGCTTGACAAACTATATTGCAGAATTGTCTCTGTTGGAGTACAATATGCTTTGTTATGCTCCATCACTTATAGCCGCTTCAGCAATTTTCCTGGCCAAATTTATCCTTTTCCCTTCAAGGAAACCATGGAATTCCACATTGCAGCATTACACACTCTACCAGCCTTCTGATTTGTGTGTTTGTGTAAAGGATCTCCATCGCCTTTGTTGCAACAGTCCTAATTCTAATTTGCCTGCAATTAGGGAAAAATACAGTCAGCACAAGTACAAATACGTGGCCAAGAAATACTGCGCTCCCTCAATACCTCCAGAATTTTTCCAGAATTGA 1491 0.4178 MSNSNRRSSFSSSTTSSLAKRHASSSENNVGGKVLAVPTHSAKKRPPLTNLTNHIASRNSGAPSSTLVPCATKVAKTKKEPQACTTTSSAISGNKIPTLPNVKSTTVVVPKVTSFPERNEDTPSVATVTVPVSNSMDVSPCKSDGMSVSMDESMSSCDSFKSPDIEYLDNSDISAVDSIERKTFSILNISDTKEPAAGSICSRDILVELEKGEKIVNIDNDHMDPQLCASFACDIYKHLRASEAKKRPAKDFMERIQKDINASMRSILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNVMSRQKLQLLGVASMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESNVLNFLKFEMTAPTIKCFLRRFVRAAQGVDEVPSMQLECLTNYIAELSLLEYNMLCYAPSLIAASAIFLAKFILFPSRKPWNSTLQHYTLYQPSDLCVCVKDLHRLCCNSPNSNLPAIREKYSQHKYKYVAKKYCAPSIPPEFFQN. 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02362 496 MobiDBLite consensus disorder prediction 45 64 - -
Seca4g02362 496 Gene3D - 234 482 - -
Seca4g02362 496 CDD CYCLIN_AtCycA_like_rpt1 224 359 - -
Seca4g02362 496 MobiDBLite consensus disorder prediction 1 64 - -
Seca4g02362 496 MobiDBLite consensus disorder prediction 1 32 - -
Seca4g02362 496 FunFam Mitotic cyclin 6 248 348 - -
Seca4g02362 496 PIRSF Cyclin_A_B_D_E 2 492 IPR046965 GO:0016538|GO:0044772
Seca4g02362 496 ProSitePatterns Cyclins signature. 265 296 IPR006671 -
Seca4g02362 496 SUPERFAMILY Cyclin-like 363 487 IPR036915 -
Seca4g02362 496 FunFam Cyclin A1 350 482 - -
Seca4g02362 496 Gene3D - 248 361 - -
Seca4g02362 496 Pfam Cyclin, C-terminal domain 363 482 IPR004367 -
Seca4g02362 496 Pfam Cyclin, N-terminal domain 234 360 IPR006671 -
Seca4g02362 496 PANTHER CYCLINS 172 474 IPR039361 -
Seca4g02362 496 SMART cyclin_7 367 455 IPR013763 -
Seca4g02362 496 SMART cyclin_7 270 354 IPR013763 -
Seca4g02362 496 CDD CYCLIN_AtCycA-like_rpt2 363 477 - -
Seca4g02362 496 SUPERFAMILY Cyclin-like 224 360 IPR036915 -
Seca4g02362 496 SMART Cyclin_C_2 363 486 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02362 Seca-Chr4 40177449 40181319 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02362 1 496 Core Cell Cycle Gene Families AT1G44110 63.147 0.0 574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02362 K06627 - gmx:100789565 750.74