Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02356 ATGGCGCCAATCCTGCAGAGCTCTCAGCCATGGGTCGAGAAATACCGGCCAAAGCAAGTGAAAGACGTTGCTCACCAAGATGAAGTCGTTCGAGTACTCACAAACACCCTTGAAACCGGAAGCTGCCCCCACATGCTTTTCTACGGTCCTCCCGGAACAGGAAAAACCACCACTGCCCTCGCAATCGCACATCAACTTTTCGGGCCTGAGCTCTATAAGTCTAGGGTGCTGGAGCTGAATGCTAGTGATGACCGTGGGATTAATGTGGTTCGTACAAAGATAAAAGATTTTGCTGCTGTGGCTGTTGGTACTAATCAGCGTAAGAATGGTTATCCTTGTCCACCTTATAAGATTATTGTTCTAGATGAGGCAGATTCAATGACGGAAGATGCTCAGGCATGTTATAATGCCCTTAGGCGTACAATGGAAACTTACTCTAAAGTTACAAGGTTCTTTTTTATATGCAACTACATTAGCAGGATTATAGAACCACTTGCCTCAAGGTGTGCAAAATTCAGGTTCAAGCCATTGTCAGAAGAAATCATGAGCAGCCGAATATCATACATTTGCAAAGAAGAAGGAATCTATCTTGATGCTGAGGTAGGAACCTTAGAGCTTAACAGTGGTCTTTCAACCCTGAGTTCTATTTCTCAAGGAGATCTTCGTCGGGCTATCACATACTTGCAGTCTGCTGCTCGCCTATTTGGATCTTCCATTTCTTCAAAGGACCTGATTTCTGTGTCTGGGGTTGTTCCACCAAATGTTGTGGAAGAACTTCTTAAAGCATGCAAAAGTGGTAATTTTGATTTGGCCAACAAGGAAGTCAACAATTTCATTGCAGAGGGATATCCTGCCTCTCAGATGCTAACTCAGTTATTTGAGGCCATTGTTGAAGAAAATGACATATCAGATGAACAGAAGGCAAGAATATGCAAGAAGCTGGGTGAAGCAGATAAGTGCCTAGTTGATGGTGCTGATGAATACTTGCAGCTTCTTGGAGTGGTCAGCAATACAATGCAAGCTTTATGTAACATGCCAGAAGGATTTGCTTATGAGGGTTAA 1062 0.435 MAPILQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQRKNGYPCPPYKIIVLDEADSMTEDAQACYNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRISYICKEEGIYLDAEVGTLELNSGLSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVVPPNVVEELLKACKSGNFDLANKEVNNFIAEGYPASQMLTQLFEAIVEENDISDEQKARICKKLGEADKCLVDGADEYLQLLGVVSNTMQALCNMPEGFAYEG. 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02356 353 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 9 332 - -
Seca4g02356 353 FunFam Replication factor C subunit 4 179 250 - -
Seca4g02356 353 Gene3D - 3 176 IPR027417 -
Seca4g02356 353 Gene3D - 251 340 - -
Seca4g02356 353 FunFam Replication factor C subunit 5 3 177 - -
Seca4g02356 353 Gene3D - 179 250 - -
Seca4g02356 353 SMART AAA_5 41 177 IPR003593 GO:0016887
Seca4g02356 353 SUPERFAMILY post-AAA+ oligomerization domain-like 251 336 IPR008921 GO:0003677|GO:0006260
Seca4g02356 353 CDD AAA 26 169 - -
Seca4g02356 353 FunFam Replication factor C subunit 4 251 340 - -
Seca4g02356 353 CDD HLD_clamp_RFC 177 244 - -
Seca4g02356 353 Pfam ATPase family associated with various cellular activities (AAA) 45 175 IPR003959 GO:0005524|GO:0016887
Seca4g02356 353 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 244 IPR027417 -
Seca4g02356 353 Pfam Replication factor C C-terminal domain 251 336 IPR013748 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02356 Seca-Chr4 40130852 40137147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02356 1 349 Core DNA Replication Machinery Family AT1G21690 76.286 0.0 544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02356 K10755 - gmx:100798331 610.142