Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02353 ATGCGAGAGGCAGAGGAAAAGCGAGTGAGTGACATGGTAACTACCTCATCGCCAGTTGGAGGTAGCAACCGCGTCAATGAGACCTCCTCTAACAACTCTAATACACCATCTGATTATCATGACTCTTCAAATCACGATGAGAAACCTGGATGGAGAAAGTTCTTGCCATATGTAGGTCCTGGTTTCCTCGTCTCCTTGGCTTACCTTGATCCTGGAAACATGGAAACTGATCTGCAAGCTGGAGCTAACCACAGATATGAGCTGCTGTGGTTGGTACTTATTGGACTGGTATTTGCGCTTATAATTCAGTCATTGGCTGCAAATCTCGGCGTAACCACTGGTAAACACCTTTCAGAAGTATGTAAAGTTGAGTACCCATTATTTGTTAAGTACGGCTTATGGTTATTAGCCGAGGTTGCTGTGATAGCTGCAGACATACCTGAAGTGATTGGTACAGCCTTTGCGCTTAACATACTCTTCCACATCCCTTTATGGGTAGGAGTTCTATTGACGGGTTGTAGCACCCTCTTGCTTCTGAGTCTGCAGAGATTTGGGGTGAGGAAGTTGGAACTACTGATATCGACTCTAGTTTTTGTAATGGCTGCATGTTTCTTTGTGGAAATGAGCTATGTACATCTCCCATTGTCTGATGTATTAAAGGGAATGTTTGTTCCCAAACTCAACGGGGAAGGAGCCGTAGGCGATGCTATTGCTCTTTTGGGTGCCCTTATCATGCCGCACAATCTTTTCCTTCATTCTGCTCTCGTGCTGTCTAGAAAAGTGCCTAGTTCCATGAATGGTATCAATGATGCATGTAGATACTTTCTCATAGAGAGTGGGTTCGCACTATTTGTGGCATTTCTAATCAATGTTGCAATAGTTTCTGTGTCGGGCACTGTTTGCTCTACCAGTAACCTTTCTGCAGAAAATACTGATCAATGCAAAGATCTTAACCTCAACTCTGCTTCTTTCCTTCTCAAGAATGTGTTGGGACGATCTAGCTCAACCATTTATGCCATAGCACTACTAGCCTCAGGACAAAGTTCTACAATTACTGGAACCTATGCAGGGCAGTACGTCATGCAGGGTTTCTTGGACATAAAGATGAAAAGATGGAAAAGGAACTTGATGACTAGGTGCATTGCCATAGCACCTAGTCTAATTGTTTCCATCATTGGTGGTTCTTCGGGGTCTAGTCGACTTATTATTATAGCATCAATGATACTTTCTTTTGAGCTTCCATTTGCTTTAATTCCACTCCTTAAGTTTAGCAGCAGTAGTACCAAGATGGGACCTTACAAGAACTCTTTGATTATCATTATCATATCATGGATACTAGGCTTTGGGATCATCGGTATCAATGTGTACTACCTCAGCACTGCCTTTGTGAGTTGGCTAATTCATAACAATCTACCAAAAGTGGCAAATGTGTTCATTGGGATTATAGTGTTTCCTTTAATGACAATGTATATTATCTCAGTTATCTACCTAACCTTCAGAAAAGACTCTGTTAAGATATTTGTAGAGATGAAGAATGACCCGGTAATACAAACTCATATGGAAAAGGGGATTCTGGAAAATGGTCAATTAGAGTTGAGTCATGCTCATTACAGAGAAGACTTAGCTGATATTCCACTACCGGAATGA 1647 0.4177 MREAEEKRVSDMVTTSSPVGGSNRVNETSSNNSNTPSDYHDSSNHDEKPGWRKFLPYVGPGFLVSLAYLDPGNMETDLQAGANHRYELLWLVLIGLVFALIIQSLAANLGVTTGKHLSEVCKVEYPLFVKYGLWLLAEVAVIAADIPEVIGTAFALNILFHIPLWVGVLLTGCSTLLLLSLQRFGVRKLELLISTLVFVMAACFFVEMSYVHLPLSDVLKGMFVPKLNGEGAVGDAIALLGALIMPHNLFLHSALVLSRKVPSSMNGINDACRYFLIESGFALFVAFLINVAIVSVSGTVCSTSNLSAENTDQCKDLNLNSASFLLKNVLGRSSSTIYAIALLASGQSSTITGTYAGQYVMQGFLDIKMKRWKRNLMTRCIAIAPSLIVSIIGGSSGSSRLIIIASMILSFELPFALIPLLKFSSSSTKMGPYKNSLIIIIISWILGFGIIGINVYYLSTAFVSWLIHNNLPKVANVFIGIIVFPLMTMYIISVIYLTFRKDSVKIFVEMKNDPVIQTHMEKGILENGQLELSHAHYREDLADIPLPE. 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02353 548 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 52 428 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g02353 548 MobiDBLite consensus disorder prediction 11 39 - -
Seca4g02353 548 Pfam Natural resistance-associated macrophage protein 75 436 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g02353 548 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 34 506 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g02353 548 NCBIfam Nramp family divalent metal transporter 59 425 - -
Seca4g02353 548 MobiDBLite consensus disorder prediction 1 46 - -
Seca4g02353 548 Hamap Divalent metal cation transporter MntH [mntH]. 36 462 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g02353 548 PRINTS Natural resistance-associated macrophage protein signature 346 365 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g02353 548 PRINTS Natural resistance-associated macrophage protein signature 374 391 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g02353 548 PRINTS Natural resistance-associated macrophage protein signature 161 180 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g02353 548 PRINTS Natural resistance-associated macrophage protein signature 236 259 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g02353 548 PRINTS Natural resistance-associated macrophage protein signature 133 159 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g02353 548 PRINTS Natural resistance-associated macrophage protein signature 186 207 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g02353 548 PRINTS Natural resistance-associated macrophage protein signature 406 425 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02353 Seca-Chr4 40072357 40077795 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02353 21 547 Inorganic Solute Cotransporters AT1G15960 58.491 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02353 K21398 - gmx:100787785 840.491