Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02352 ATGACGACAGAGAAACCATGGAAGAAGTTATTGACATATATAGGTCCTGGTTTCCTTGTCTCCTTGGCTTACCTTGATCCTGGAAACTTGGAAACGGATCTGCAAGCTGGAGCTGACCACAAATATGAGCTGCTGTGGGTGATACTTATTGGACTGGTGTTTGCCCTTATAATTCAGTCCTTGTCTGCAAATCTCGGCGTATGCACTGGCAAACACCTTTCAGAAATATGTAAAGCAGAATACCCACCATTTGTGAAGTACTGCTTATGGTTATTAGCCGAGCTTGCTGTCGTAGCCGCAGACATACCTGAAGTGATTGGCACAGCCTTTGCGCTGAACATACTCTTCCACATCCCTGTATGGGCTGGAGTGCTATTCACTGGCTGCAGCACTCTCTTGTTTCTCAGTCTCCAGAGATTTGGGGTACGAAAGTTAGAACTACTGATATCATCCCTAGTTTTTGTTATGGCTGCATGTTTCTTTGGGGAAATGAGCTATGCCAAACCCCCTGCTTCTGATGTATTAAACGGAATGTTTGTACCCAAACTCAGAGGTCAGGAAGCCACAGGCGATGCTATTGCTGTTTTGGGTGCCCTTGTTATGCCGCACAATCTTTTCCTTCACTCTGCTTTGGTGCTGTCTAGAAAAGTACCCAGTTCCGTTCGTGGCATCAATGATGCATGTAGATACTTTCTCATAGAAAGTGGGTTTGCACTGTTTGTGGCATTTCTAATCAATGTTGCAGTAGTTTCTGTTTCGGGTACTGTTTGCTCTGCCACCAACCTCTCTACAGAAAATACTAAACATTGCAACGATCTTACCCTTAACTCTGCTTCTTTCCTTCTCAAGAATATGTTGGGACGGTCAAGCTCAACTATTTATGCCATAGCATTACTAGCCTCAGGACAAAGTTCTGCCATCTCTGGAACTTATGCAGGGCAATACATCATGGAGGGTTTCTTGGACTTAAAGATGAAAAAATGGATTAGGAACTTGATGACTAGGTCAATTGCCATAACACCTAGTCTTATTGTCTCCATCATTGGTGGTCCTTCTGGGGCTGGTCGGCTTATTGTCATTGCATCGATGATACTTTCTTTTGAGCTTCCATTCGCTTTAATTCCACTCCTTAAGTTCAGTAGTAGCAGTACCAAGATGGGACCTCACAAGAATTCTTTGAGTATTATTATCCTGTCTTGGATACTAGGCTTGGGGATCATCACTATCAATGTGTACTACCTCATTACTGCCTTTATGGGTTGGCTAATTCATAGCAGTTTACCAAAAGTGGCAAATGTGTTCATTGGGATCTTAGTGTTTCCTTTAATGGCAATTTATCTTATCTCAGTTATCTACCTAACCTTCAGAAAAGACACTGTCAAAACATTTGAAGAGAATGAAATAGTAATGCAAACCCACATGGAAAAGGGCTGTCTGAATAATGGTCAGGTAGAGATGAATCAGGTCCCCTAG 1473 0.427 MTTEKPWKKLLTYIGPGFLVSLAYLDPGNLETDLQAGADHKYELLWVILIGLVFALIIQSLSANLGVCTGKHLSEICKAEYPPFVKYCLWLLAELAVVAADIPEVIGTAFALNILFHIPVWAGVLFTGCSTLLFLSLQRFGVRKLELLISSLVFVMAACFFGEMSYAKPPASDVLNGMFVPKLRGQEATGDAIAVLGALVMPHNLFLHSALVLSRKVPSSVRGINDACRYFLIESGFALFVAFLINVAVVSVSGTVCSATNLSTENTKHCNDLTLNSASFLLKNMLGRSSSTIYAIALLASGQSSAISGTYAGQYIMEGFLDLKMKKWIRNLMTRSIAITPSLIVSIIGGPSGAGRLIVIASMILSFELPFALIPLLKFSSSSTKMGPHKNSLSIIILSWILGLGIITINVYYLITAFMGWLIHSSLPKVANVFIGILVFPLMAIYLISVIYLTFRKDTVKTFEENEIVMQTHMEKGCLNNGQVEMNQVP. 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02352 490 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 8 384 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g02352 490 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 5 463 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g02352 490 PRINTS Natural resistance-associated macrophage protein signature 302 321 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g02352 490 PRINTS Natural resistance-associated macrophage protein signature 330 347 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g02352 490 PRINTS Natural resistance-associated macrophage protein signature 117 136 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g02352 490 PRINTS Natural resistance-associated macrophage protein signature 362 381 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g02352 490 PRINTS Natural resistance-associated macrophage protein signature 89 115 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g02352 490 PRINTS Natural resistance-associated macrophage protein signature 142 163 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g02352 490 PRINTS Natural resistance-associated macrophage protein signature 192 215 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g02352 490 Pfam Natural resistance-associated macrophage protein 31 392 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g02352 490 NCBIfam Nramp family divalent metal transporter 15 381 - -
Seca4g02352 490 Hamap Divalent metal cation transporter MntH [mntH]. 1 418 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02352 Seca-Chr4 40064721 40070788 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02352 1 462 Inorganic Solute Cotransporters AT1G80830 63.636 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02352 K21398 - gmx:100787785 814.683