Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02350 ATGGCAAGCCTGCAACAACAAGCTGAGTCTGAGAATGGGAGTGGAGGTAGCAACCGCATAGTAGCCCTCAATGTCACCCCTTCTAATAATAATTATGATTACGATGCCTCCTCAAAGCACAATCATCAGAAACCTGGGTGGAGAAAGTTCTTGTCATATGTTGGTCCCGGTTTCCTCGTCTCCTTGGCTTATCTTGATCCTGGAAACATGGAAACTGATCTGCAAGCTGGAGCTGACCATAGATATGAGCTGCTGTGGGTGATACTGATTGGACTGGTGTTTGCGCTTATAATTCAGTCATTGGCTGCAAATCTCGGCGTATGCACTGGCAAGCACCTTTCAGAAATATGTAAAGCTGAGTACCCATTATTTGTTAAGTACTGCTTATGGTTATTAGCAGAGCTTGCTGTCATAGCTGCAGACATACCTGAAGTGATTGGTACAGCCTTTGCGCTTAACATACTCTTCCATATCCCAGTATGGGCAGGAGTCCTGTTGACTGGCTTCAGCACTCTCTTGTTTCTGGGTCTGCAGAGATTTGGGGTACGAAAGTTGGAACTGCTAATATCAATCCTAGTTTTTGTAATGGCTGGATGTTTCTTTGGGGAAATGAGCTATGTTAAACCTCCTGCTTCTGATGTATTAAAAGGAATGTTTGTACCCAAACTCAGTGGTCAAGGAGCTGTAGGCGATGCTATTGCCCTTTTGGGTGCCCTTGTCATGCCGCACAACCTTTTCCTCCACTCTGCTCTGGTATTGTCTAGAAAAGTACCTGGTTCTGTGCGTGGCATCAATGATGCATGTAGATTCTTTCTCATTGAAAGTGGATTCGCGTTGTTTGTGGCATTTCTAATCAATGTTGCAATGGTTTCTGTGTCGGGAACTGTTTGCTCAGCCAACAATCTTTCCGCAGAAAATAATGATCGTTGCAGTGATCTTACCCTTAACTCTGCTTCTTTCCTTCTCCAGAATGTGTTGGGACGATCAAGCTCAACCATTTATGCCATAGCACTGCTAGCCTCAGGACAAAGTTCTGCTATCACTGGAACCTATGCAGGGCAATACATCATGCAGGGTTTTTTGGACTTGAAGATGAAAAGGTGGATTAGGAACTTGGTTACTAGGTGTATTGCCATAACACCTAGTCTTATTGTCTCTATCATTGGTGGTCCTTCTGGGGCGGGTCGACTTATCATTATTGCATCGATGATACTTTCTTTTGAGCTTCCATTTGCTTTAATTCCACTCCTTAAGTTTAGTAGCAGTAGTACCAAGATGGGACCTCACAAGAATTCTATGATTATCATTATCTTCTCATGGATATTGGGCTTGGGGATCATTGGTATCAATGTGTACTACCTCATTACTGCCTTTGTGGGATGGTTAATTCATAGCAGTCTACCAAAGGTGGCAAATGTGTTTATTGGGATCATAGTGTTTCCTCTAATGGCAATTTATATTATCTCAGTCATCTACTTAACCTTCAGAAAAGACACTGTTAAAACATTTATTGAGACAAAGAATGACCCGGCAATACAAACCCATGTGGAAAAAGGGTTTTTGAATAATGGTCAATTACAGTTGAGCCAAGCACCTTACAGAGAAGATTTAGCTGATATCCCACTACCACAATAA 1635 0.4251 MASLQQQAESENGSGGSNRIVALNVTPSNNNYDYDASSKHNHQKPGWRKFLSYVGPGFLVSLAYLDPGNMETDLQAGADHRYELLWVILIGLVFALIIQSLAANLGVCTGKHLSEICKAEYPLFVKYCLWLLAELAVIAADIPEVIGTAFALNILFHIPVWAGVLLTGFSTLLFLGLQRFGVRKLELLISILVFVMAGCFFGEMSYVKPPASDVLKGMFVPKLSGQGAVGDAIALLGALVMPHNLFLHSALVLSRKVPGSVRGINDACRFFLIESGFALFVAFLINVAMVSVSGTVCSANNLSAENNDRCSDLTLNSASFLLQNVLGRSSSTIYAIALLASGQSSAITGTYAGQYIMQGFLDLKMKRWIRNLVTRCIAITPSLIVSIIGGPSGAGRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSMIIIIFSWILGLGIIGINVYYLITAFVGWLIHSSLPKVANVFIGIIVFPLMAIYIISVIYLTFRKDTVKTFIETKNDPAIQTHVEKGFLNNGQLQLSQAPYREDLADIPLPQ. 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02350 544 Hamap Divalent metal cation transporter MntH [mntH]. 37 458 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g02350 544 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 48 424 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g02350 544 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 37 502 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g02350 544 NCBIfam Nramp family divalent metal transporter 55 421 - -
Seca4g02350 544 PRINTS Natural resistance-associated macrophage protein signature 342 361 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g02350 544 PRINTS Natural resistance-associated macrophage protein signature 232 255 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g02350 544 PRINTS Natural resistance-associated macrophage protein signature 182 203 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g02350 544 PRINTS Natural resistance-associated macrophage protein signature 157 176 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g02350 544 PRINTS Natural resistance-associated macrophage protein signature 402 421 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g02350 544 PRINTS Natural resistance-associated macrophage protein signature 129 155 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g02350 544 PRINTS Natural resistance-associated macrophage protein signature 370 387 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca4g02350 544 Pfam Natural resistance-associated macrophage protein 71 432 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02350 Seca-Chr4 40041966 40046325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02350 14 544 Inorganic Solute Cotransporters AT1G15960 58.945 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02350 K21398 - gmx:100787785 947.192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02350 4 40041966 40046325 Seca4g02350 4 40041966 40046325 ECH