Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02343 ATGGTTGATAGGGTCGAGACGGTTGCCAGATTCGCACAGTGGAAAATCGACAACTTCGGACCTTGTTCCTACAAAAAATCTGAACCTTTCAAGGTCGGAATCTGGAACTGGTGCTTTTCAATAGTGAGGAATAGGTACCTCTACATACACCTCTTTCCAGAACCTTCGCGGGTTTCTAAGGAACACCCACCCCTTGCTCGATTCATTCTTCGAGTCTCAAATGCTGGCTCATCCCATGGAAACTGTAAAAAGTTTTATGTCAATCCTGCCCTGCAATTCAACCAAGAAGATATAGGGATAATCTCATATTGCAAGACATTGCAATTACCCATAGCAGTTTCAAGATTATATAGTGAAATGCTGACACTGGTTGCACTGTCATTTCCTTGTAATGCTACAGTTCATGAAAAGCTGATTAGGACACATGATGACTTTGTCTGGCCTGTTGATACTACTTTCGTTGGCCGCTTCATTATTGATGTGGAGTTTCTAGACCTGAAGAAATGCCCTCTGAATGGTGGAGAAGCTAGTTCTATATGGCCATCTGATGGAAATTCACAATCCATTGCAGCTCAAAGTAGTTCTCTTCGTTGCCTCTCTCGCATGCTTGATGAAGGTATACATGCTGACCTAACCATTATCACTTCTTATGGTACGCTGAGAGCTCACAAGGCAGTCTTGTCCGCAAGTTCTCCTGTGTTCCAGAGCATGTTTCATCACAACCTGAAAGAAAAAGAGTCATCTACAATCCATATAGAAGACATGTCACTTGAATCCTGCATGGCTCTTTTAAGTTACTTGTATGGAACAATTAAACAAGAAGATTTCTGGAAGCACCGGCTTGCATTGCTCCAAGCAGCAAATAAATATGACATTGCTGGTCTCAAAGACTTCTGTGAGGAAAGCCTTCTTGAAGATCTTAACTCAGGAAATGTTCTGGATATGCTAAATGAGGCTTGGTTTTATCAATTACACAAGTTAAAGAAAGGATGTTTGATGTTCTTATTTGAATTTGGTAAAATATATGATGTCAGAGATGATGAAATAAAAAACTTTTTCCAGCATGCAGATAGGGAGCTAATGATGGAGATGTTTCAGGAGGTGCTTACAATTTCGAACCATGTATAG 1128 0.406 MVDRVETVARFAQWKIDNFGPCSYKKSEPFKVGIWNWCFSIVRNRYLYIHLFPEPSRVSKEHPPLARFILRVSNAGSSHGNCKKFYVNPALQFNQEDIGIISYCKTLQLPIAVSRLYSEMLTLVALSFPCNATVHEKLIRTHDDFVWPVDTTFVGRFIIDVEFLDLKKCPLNGGEASSIWPSDGNSQSIAAQSSSLRCLSRMLDEGIHADLTIITSYGTLRAHKAVLSASSPVFQSMFHHNLKEKESSTIHIEDMSLESCMALLSYLYGTIKQEDFWKHRLALLQAANKYDIAGLKDFCEESLLEDLNSGNVLDMLNEAWFYQLHKLKKGCLMFLFEFGKIYDVRDDEIKNFFQHADRELMMEMFQEVLTISNHV. 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02343 375 SUPERFAMILY POZ domain 193 305 IPR011333 -
Seca4g02343 375 PANTHER OS08G0495500 PROTEIN-RELATED 3 373 IPR044714 -
Seca4g02343 375 Pfam BTB/POZ domain 201 305 IPR000210 GO:0005515
Seca4g02343 375 Gene3D Potassium Channel Kv1.1; Chain A 182 336 IPR011333 -
Seca4g02343 375 CDD BTB_POZ_ZBTB_KLHL-like 208 290 - -
Seca4g02343 375 ProSiteProfiles BTB domain profile. 209 268 IPR000210 GO:0005515
Seca4g02343 375 SMART BTB_4 209 307 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02343 Seca-Chr4 39960270 39964235 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Seca4g02343 BTB 3.6e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02343 K10523 - gmx:100787262 540.806