Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02316 ATGGCATCAGAGCTTCAATTGCCACCAGGCTTCAGATTCCATCCAACGGATGAGGAGCTCGTGATGCACTACCTCTGTCGCAAATGCGCATCGCAGCCCATAGCCGTTCCAATCATCGCCGAAGTCGACCTCTACAAGTATGATCCTTGGGATCTTCCTGGTCTGGCTTCGTACGGAGAGAAGGAGTGGTACTTCTTTTCACCGCGGGACCGTAAATATCCAAATGGTTCGAGGCCGAATCGGGCGGCTGGGAGTGGTTACTGGAAGGCAACAGGTGCAGATAAGCCCATTGGTCATCCAAAGCCCGTTGGGATCAAGAAAGCACTGGTGTTCTATGCAGGAAAAGCACCTAAAGGGGATAAAACCAACTGGATCATGCACGAGTATCGACTTGCCGATGTAGATCGATCCATTCGCAAAAAGAACAGTTTAAGGCTGGATGACTGGGTGCTTTGCCGGATTTACAATAAGAAGGGAACCGTCGAGAAACAACCAAGCAGCGGTGTTGTTAGCCGGAAAACTGAATCCTCGGAAATCGAAGACATGAAGCCGGAGATTCTGACACGTGGTGGCGGTCTTCCGCCGCCACACCCACCGCAAGCTTCGGTGGTGATGACGGATTACATGTACTTTGACAAGTCGGACTCAATCCCGAAGCTGCACACGGACTCGAGCTGCTCGGAACAGGTGGTGTCGCCGGAGTTTGCGAGCGAGGTGCAGAGCGAGCCGAAATGGAACGAGTGGGAAAAGAGCCTTGAATTTCCCTATAATTACATGGATGCCACTCTCAACAACAGTAGCTTCGGGGTCCAGAGCAATAATCAGATGTCGCCGTTGCAGGACATGTTCATGTACATGCCCAAGCCCTTCTAA 873 0.5178 MASELQLPPGFRFHPTDEELVMHYLCRKCASQPIAVPIIAEVDLYKYDPWDLPGLASYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGHPKPVGIKKALVFYAGKAPKGDKTNWIMHEYRLADVDRSIRKKNSLRLDDWVLCRIYNKKGTVEKQPSSGVVSRKTESSEIEDMKPEILTRGGGLPPPHPPQASVVMTDYMYFDKSDSIPKLHTDSSCSEQVVSPEFASEVQSEPKWNEWEKSLEFPYNYMDATLNNSSFGVQSNNQMSPLQDMFMYMPKPF. 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02316 290 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Seca4g02316 290 FunFam NAC transcription factor 16 161 - -
Seca4g02316 290 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
Seca4g02316 290 PANTHER NAC TRANSCRIPTION FACTOR 56 7 219 - -
Seca4g02316 290 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Seca4g02316 290 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02316 Seca-Chr4 39433975 39436054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02316 1 290 NAC Transcription Factor Family AT1G01720 73.000 8.66e-153 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca4g02316 NAM 1.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02316 - - gmx:100805768 525.398