Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02315 ATGGAACATGAAGATGGCAAACAATCTTCCCACAAGAACCCATATGAAGAAGAAAACTTTGATTTGATTCTAGCAATTGGCTTGCAAGAACAAGAGAGAACGTTCGCAATGCTAGAAACGATTGAAAGTGAAAGTGATGAAGATGTAAGTGACTCCTCTTTCGATAATGATGATGACTTTTCAGAGAGCCAAGAGATTGAATCCGACCTTCAGTTTCTTGAAGGTGAAGGAAGCAATGATGATGAAGAAATGGACATGGAAGAAGATGACATTGATCCAGATGAATTATCCTATGAAGAGTTGATTGAGTTAGGAGAGATTATAGGAGAAGAGAAAAGAGGATTATCAACAAATGAAATCTCTACCTGCTTATACCCTTACACATGCCAATCTGCAGAAAGCAAAAGTGGAATTGAGCGTTGTGTGATTTGTCAGGTTGAATATGAAAAAGGTGAAACCCTGGTGGCACTTAAGTGTGAGCACCCTTATCATTCTGATTGCATTAGCAAGTGGCTTCAGATTAAGAAGGTTTGTCCAATTTGTAAGAATGAAATTTCAACTCCCAACATGGCTAAGAACCCTTGA 585 0.3846 MEHEDGKQSSHKNPYEEENFDLILAIGLQEQERTFAMLETIESESDEDVSDSSFDNDDDFSESQEIESDLQFLEGEGSNDDEEMDMEEDDIDPDELSYEELIELGEIIGEEKRGLSTNEISTCLYPYTCQSAESKSGIERCVICQVEYEKGETLVALKCEHPYHSDCISKWLQIKKVCPICKNEISTPNMAKNP. 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02315 194 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 186 IPR033276 GO:0004842|GO:0016567|GO:0046621
Seca4g02315 194 SUPERFAMILY RING/U-box 140 188 - -
Seca4g02315 194 SMART ring_2 141 181 IPR001841 -
Seca4g02315 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 190 IPR013083 -
Seca4g02315 194 MobiDBLite consensus disorder prediction 37 87 - -
Seca4g02315 194 FunFam E3 ubiquitin ligase BIG BROTHER-related 107 188 - -
Seca4g02315 194 Pfam Ring finger domain 140 182 IPR001841 -
Seca4g02315 194 MobiDBLite consensus disorder prediction 41 65 - -
Seca4g02315 194 ProSiteProfiles Zinc finger RING-type profile. 141 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02315 Seca-Chr4 39385375 39385959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02315 88 185 C3H Transcription Factor Family AT3G63530 52.475 2.16e-31 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02315 K19045 - gmx:100526881 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02315 4 39385375 39385959 Seca8g02448 8 52270962 52271564 PCT