Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02311 ATGACTTCCATGCCATTTGATTTCTCCTGGGAAGTGAATTGTGTCCCCTTGGGCGGAGACGAATTGGAATATTATCAAAACCTCAAAGAGGAGAATTTATTTGGAGATTATTTTAACATTGAGGTTCGTGTAGAACATCAACTATGCTTTACCCCATCAAACCCACCGCAACAACCCCCTCTAATAGTACCCTTTGATTCGTTTTCATATCAAAGGTCCCTTTTTCTATTTAGCCAAGATTTTCTAGAGGATGGTTCATCATACATACAAAGGCATTTTCCTGATCCTATCATTCCCCCTGAGTTAATTCAATCAATGATGCCAGACGTGATAGCATATGCTAAAGATGAGGTCGAGAATCCTTGTTCCGTTTTCCGCACTAAAAGTGGGAACTTTAATTTATTCAATTTGGTTTTGGATATTAGAATTCAAAAGACATCTGATGAACTAGATGATGATATTATCAACATGGTCATGGAGGAGTCCATGAGAGAGACCCAAATGGTCCCTGCATCCAAGATTGCCATTGAATCCCTCCAGAAAGTGAAGCTACAAGAAGGTGTTACCAAGGAGAGATGTAGTATTTGTCTAGTGGAGTTCGATGATTGCATAGAGGTTTCATCAATGCCTTGCAAGCATGTTTATCACCATGAATGTCTTGTTCAGTGGCTTAAAACGAGTCATGTGTGTCCTTTGTGTCGCTATCCCATGCCTACTTCGGTAAGTGTGATTGATTAG 738 0.3997 MTSMPFDFSWEVNCVPLGGDELEYYQNLKEENLFGDYFNIEVRVEHQLCFTPSNPPQQPPLIVPFDSFSYQRSLFLFSQDFLEDGSSYIQRHFPDPIIPPELIQSMMPDVIAYAKDEVENPCSVFRTKSGNFNLFNLVLDIRIQKTSDELDDDIINMVMEESMRETQMVPASKIAIESLQKVKLQEGVTKERCSICLVEFDDCIEVSSMPCKHVYHHECLVQWLKTSHVCPLCRYPMPTSVSVID. 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02311 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 240 IPR013083 -
Seca4g02311 245 SUPERFAMILY RING/U-box 179 240 - -
Seca4g02311 245 ProSiteProfiles Zinc finger RING-type profile. 193 234 IPR001841 -
Seca4g02311 245 Pfam Ring finger domain 192 234 IPR001841 -
Seca4g02311 245 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 117 238 - -
Seca4g02311 245 SMART ring_2 193 233 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02311 Seca-Chr4 39323883 39324620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02311 153 238 C3H Transcription Factor Family AT1G18760 38.889 5.23e-18 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02311 - - psat:127082836 223.016