Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02301 ATGAGGTCATACTACCATAATTGTGAAGCCAAGGCTGAAGGCAGTTTATGGACATACAAATACAAGCCAACAAAGGCTGTTGAGGTATGTGGTAATGATGAAGCTGTGAATTTCTTGCGTGACTGGCTACATCTTTGGCATGAAAGACGTTATCAAAGCAGGAAAGATGCATCTAATAGGGATAAAAGTAATATGCAAGATGGTGATGATGATTATAATTTTTCTCATAGTGACTACGATTCAGAAGATATGGACGGGGAGGATTCGCTGCAGAATGTTCTTTTAATTACAGGACCAATTGGGAGTGGCAAGTCTGCAGCAGTCTATGCTTGTGCCCAAGAGCAAGGGTTTGACATATTAGAGCTCAATGCATCAGATTGTAGAAATGGGACTGTGGTCAAGCAATATTTTGGAGATACTCTTGGTTCACTTGGATTCAAAAGGTTATCAGAACACACTGCGAGTTCACAGAAGAAAAATACGAAATTGCCACCAGCTCTGGCTTCATTTAATGTTAAAGCTGCTGATGAGGTGAATGATGGGGTGGTTGAACTAATAACCATATCTGATGATGAAGCTCATAGCCCTGGTGGAACATCACAGAAGTTACTTGGCAAAAATAATGTCATTGCATGTGATAAAGTCCAAACTTTGATTCTAGTTGAGGATGTGGACATCCTTTTCCCTGAAGATCGTGGATGTATTGCTGCCATACAACAGATTGCTGAGACAGCTAGGGGGCCGATTATATTGACCAGCAATTGTGATAATCCTGGCCTGCCAGATAATTTTGATAAGCTCCACATTTCATTCTCAATGCCAACACCAAAGGAGTTGCTTTGCCATTTGTACACTGTTTGTCTCACAGAAGGAGTCAACATCCATCCTCTTTTACTGGGGAAGTTTATACAGTCTTGTGATGGAGATATTAGAAAAACCATTCTGCATCTTCAGTTCTGGTTGCAGAGTAAAAGATTTAGAAAAGATGGAAAAGCACAAGCTGGTTATGGGTCACTTCCTTTTAATCTTATTGTTGGCCATCAGATATTACCGAAGATGATGCCCTGGGATTTTCCCTCAGAGATATCTGAAATGATCGAGAATGAATTTGCTAAATCTGTAAATATAATGGAAGAGAACTCTAGTTTGCAAGAGTTAGATGAGCAGTATATGGAGACTGATTATATAAAGGCAAAGAAGGAGGAGATGATTGAGAGAAATGGATCTATAACAGATTACAGTGAGCTTGAAATTCAATATAATGCTATTTCTGAGTTTTCCAATTCTTCCAGATCCCCACATGCATCCTCTCGGCAAAATGGTCGAAGGAAACTTGTAGTGATGTCCTCTGATTCTGAGGATGAGGATTCAAATAATAGACATCCTCTAGACACACATGATGAAGCTAGTAAGGGACAATCCATCAAAGAAAATAAAGAAAGTTCCTCTCAGTTTCAATTGCAGGAAAACTACCCCAGCACATCAGTTCGCAAACTGGTTTGTTCTCAATTGGAGGATTCAGAGGAGGAACATTTTAAATATTCAGAAACAGCCGAGGATACATGCTTGAATGAAACATGTAAATCAGTTGATATATCCTGTGTGCCAGAATCAACGTTAGTTCCTGAGACTGTGATGGAAGGTGGAACAGAGACAATGTCTGGAGCTGTGTCCTCTGGCCATCTTGTTGGTCCTGTAGAAGTTTCTATAAACAATGAGTTGAAACCATTCACTTTCAGTGGTCGCAAACGCTTAGCAAAATTGTCACAAAATTCAGATTTGTTTGTGGATGGTGAAATTCCAGATTCTTCTCCGAAAGAGGCTGTGCAAGATTTTCTACATGAAAATATGGAAACTACAATTGTCAAGGTGATGGATGAGTGCAGTCGTGTGGATTTCAAACTAAAGTCAACATTTGTTGAGTCCAGTCCATCAATGGAGACAGATATGGTGCAACAGCTGTGGAGAAAACTCCGAGAGCGTCAAATGGATTTAAGACAGCATGTCAACTCAGAACAGCCAGGCGCGTTTCAAGTTGTTAAACTTGCTAGTAGGCTGAGCGGTCTAATTTCAGAAGCTGATTTGTTTCATAATCACCGACAGAAAAGTGATATTATGGAACCCCCAATGTTCCTTTCTGGTGAAGCCACATCTAGTTGGTATCATGAGCAAATAATGATGCCCACTATTGCTGTACATGGATTTTGTTTTTATGCAAAACTTATAGCAGATGTTGGATCAAAGTTTGGTTGTGCCGACATGGTTGATTTAACTTCTGAGATGTTGGCTTCCACAACTGATATTATGGCATTGGGGAAATTATCTAGACAGGATCTCGCTAAAAGTATGATTATTTATACTGGAAAGGAATTAGAGTTGAACCACGCAATAAATGATATGCGGAAGAGTGAAAACAAAACATCTCTGTTCGAGGTCATCCAATCCATTGTTCCTGCCAGAATATCCTTGGCACTGAAAGGTGATGCATTCAATGAATATCTATGTTCATTGCGCCAAATTTCTAGGTCAGAAGCTTCCCGTATTGCACAATGTGTCGAAAAGAAGAGAAGAGGAAGGGTGAGGGGTGCTCAACATTACTTGAGCAGATGCACAATGTTGTCCTCTGAAGACATATCTTTGGTGAATGAAGGTGATTTGTACAGAAAGACTTCTTCACAATATACAACTAACATGGAAAGCTGA 2703 0.3988 MRSYYHNCEAKAEGSLWTYKYKPTKAVEVCGNDEAVNFLRDWLHLWHERRYQSRKDASNRDKSNMQDGDDDYNFSHSDYDSEDMDGEDSLQNVLLITGPIGSGKSAAVYACAQEQGFDILELNASDCRNGTVVKQYFGDTLGSLGFKRLSEHTASSQKKNTKLPPALASFNVKAADEVNDGVVELITISDDEAHSPGGTSQKLLGKNNVIACDKVQTLILVEDVDILFPEDRGCIAAIQQIAETARGPIILTSNCDNPGLPDNFDKLHISFSMPTPKELLCHLYTVCLTEGVNIHPLLLGKFIQSCDGDIRKTILHLQFWLQSKRFRKDGKAQAGYGSLPFNLIVGHQILPKMMPWDFPSEISEMIENEFAKSVNIMEENSSLQELDEQYMETDYIKAKKEEMIERNGSITDYSELEIQYNAISEFSNSSRSPHASSRQNGRRKLVVMSSDSEDEDSNNRHPLDTHDEASKGQSIKENKESSSQFQLQENYPSTSVRKLVCSQLEDSEEEHFKYSETAEDTCLNETCKSVDISCVPESTLVPETVMEGGTETMSGAVSSGHLVGPVEVSINNELKPFTFSGRKRLAKLSQNSDLFVDGEIPDSSPKEAVQDFLHENMETTIVKVMDECSRVDFKLKSTFVESSPSMETDMVQQLWRKLRERQMDLRQHVNSEQPGAFQVVKLASRLSGLISEADLFHNHRQKSDIMEPPMFLSGEATSSWYHEQIMMPTIAVHGFCFYAKLIADVGSKFGCADMVDLTSEMLASTTDIMALGKLSRQDLAKSMIIYTGKELELNHAINDMRKSENKTSLFEVIQSIVPARISLALKGDAFNEYLCSLRQISRSEASRIAQCVEKKRRGRVRGAQHYLSRCTMLSSEDISLVNEGDLYRKTSSQYTTNMES. 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02301 900 Gene3D - 14 266 IPR027417 -
Seca4g02301 900 MobiDBLite consensus disorder prediction 427 490 - -
Seca4g02301 900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 322 IPR027417 -
Seca4g02301 900 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 276 337 - -
Seca4g02301 900 MobiDBLite consensus disorder prediction 54 80 - -
Seca4g02301 900 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 1 892 IPR004582 GO:0006281
Seca4g02301 900 MobiDBLite consensus disorder prediction 54 85 - -
Seca4g02301 900 Gene3D - 274 335 - -
Seca4g02301 900 MobiDBLite consensus disorder prediction 447 475 - -
Seca4g02301 900 MobiDBLite consensus disorder prediction 476 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02301 Seca-Chr4 39168531 39176093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02301 17 319 Core DNA Replication Machinery Family AT5G22010 21.725 1.31e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02301 K26118 - gmx:100784209 1292.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02301 4 39168531 39176093 Seca4g02301 4 39168531 39176093 ECH