Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02296 ATGTATCATTTTTTTGAGCAATTGCATAAAGACAACAGTCATAGAAAGATAAATGGATGGAGTAGGTTCCAAGACCACGCCTTTGAGCGAGCAATCAGAATCTTCCCAGAAGGCACAGAAGACCGATGGGAGAAAGTTGCTCGTCAAGTTCCTGGCCAGTCACCAGCAAAGGTCAAGGAGCACTATGATGTCTATGTCCATGACATTGAATTGATTGAGTCAGGTAATGTTGAGTTGCCAGATTACTTAGATGATTTAGTTTCAAAACCAACAATAGAAGATGATGGGCCCAGAGAGAAGACCCCTTCCACTTGCGGCAAGAAAATGGTGCAATATTGGACTAAAGAGGAACACGAGTTATTTCTATCGGGGCTCAAGATATATGGTAGGGGAAATTGGAAAAGTATTTCAAAATACGTCGTTAAATCAAAAACTGCAACTCAAGTTGCTAGCCATGCTCAGAAATATTTTATTCGTGTTGCCACAACAAAAGAGAAAAAAAGAACAAGCATCCACGACACAGTCTCAGGGGGAAATGACTCTGTCCCTCACCTTATTCATCAACAGAATTTGATTTTACCTTCAAATGCTACAATGCAGTAA 603 0.4046 MYHFFEQLHKDNSHRKINGWSRFQDHAFERAIRIFPEGTEDRWEKVARQVPGQSPAKVKEHYDVYVHDIELIESGNVELPDYLDDLVSKPTIEDDGPREKTPSTCGKKMVQYWTKEEHELFLSGLKIYGRGNWKSISKYVVKSKTATQVASHAQKYFIRVATTKEKKRTSIHDTVSGGNDSVPHLIHQQNLILPSNATMQ. 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02296 200 NCBIfam myb-like DNA-binding domain, SHAQKYF class 112 159 IPR006447 GO:0003677
Seca4g02296 200 Gene3D - 12 79 - -
Seca4g02296 200 ProSiteProfiles Myb-like domain profile. 113 157 IPR001005 -
Seca4g02296 200 FunFam Transcription factor SRM1 12 79 - -
Seca4g02296 200 SMART sant 16 68 IPR001005 -
Seca4g02296 200 SMART sant 109 159 IPR001005 -
Seca4g02296 200 Pfam Myb-like DNA-binding domain 112 157 IPR001005 -
Seca4g02296 200 ProSiteProfiles SANT domain profile. 113 161 IPR017884 -
Seca4g02296 200 CDD SANT 113 157 IPR001005 -
Seca4g02296 200 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 113 161 IPR017930 -
Seca4g02296 200 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 18 182 IPR043363 -
Seca4g02296 200 SUPERFAMILY Homeodomain-like 106 160 IPR009057 -
Seca4g02296 200 ProSiteProfiles Myb-like domain profile. 12 66 IPR001005 -
Seca4g02296 200 Gene3D - 111 162 - -
Seca4g02296 200 SUPERFAMILY Homeodomain-like 19 74 IPR009057 -
Seca4g02296 200 CDD SANT 20 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02296 Seca-Chr4 39118078 39119527 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca4g02296 Myb_DNA-binding 7.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02296 - - tss:122658919 169.088