Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02288 ATGGAGGACCAAAATGGTAGTGGTAAGTTGAGCAAGGGACTCCGCAAGGTGAAGCCTTACCTTGCTATATTGTCCCTTCAGTTTGGTTACTCTGGCATGTATATTATCACTATGGTTTCTTTCAAACATGGCATGAGCCATTGGATACTCTCAGTGTACCGTCATGTAGTTGCGGCCATTATTATAACACCTTTCGCCCTTGTCCTTGAAAGAAAAATAAGGCCAAAGATGACTCTCCCTATATTCCTGAGGATAGTGGCACTTGGTTTCCTTGAGCCAGTGCTAGATCAAAATTTGTACAACATGGGGATGAAGATGACCTCAACAACGTTTGCATCTGCAACCGTTAATGTCCTTCCAGCCATTACTTTTATAATGGCACTCATTTTCAGGTTAGAGAGCATCAATTGGAGAAAATTTCACAGCGTGGCGAAGGTGATTGGAACCGTTATAACAGTTTCAGGGGCTATGGTTATGACTTTGTACAAAGGCCCTGCTTTTCAGATCATAAAGGGAGGAGGAGCAATTAACCACCATGGCAGCTCCAACACTGATGAACCCTCTGATCAGAACTGGATTCTTGGCACAATCATGCTCATTTCAAGTTGTGCTAGTTGGGCTGGCTTCTTCATTTTGCAATCATTCACTTTGAAGAAGTACCCAGCAGAGCTGTCACTCACAGCTTGGATTTGCTTGTTGGGAATTATTGAGGGTTCAATCGCATCTTTCATATTTGAACGGGACATGAGTGTGTGGGTCATAGGCTGGGACTCAAGGCTTCTTGCTTGTGTTTATTCTGGGGTGATATGCTCTGGAATGGCATACTATGTACAAGGGGTTGTGACCAGGGAACGTGGACCAGTGTTTCTAACATCTTTCAGTCCAATGTGTATGATTATCACTGCTGCATTGGGTTCACTTGTCCTAGCTGAGCAAGTTCATCTGGGAAGTATATTTGGAGCTATTCTGATTGTGTCGGGGCTTTACACTGTGGTATGGGGCAAAAGCAAAGACAGACAGAACACAGATACAGGGAAAGGGGAAGTGGAAGGATTGCCAATTAAGGATGGTACAAGAACAGATCAATCAGACAATTTTGATGGAATTGAGATCAATGTTCCTGCCAAGAAAGGGGCAGGGAAAATTGCTCCACCACAAGCATGA 1164 0.439 MEDQNGSGKLSKGLRKVKPYLAILSLQFGYSGMYIITMVSFKHGMSHWILSVYRHVVAAIIITPFALVLERKIRPKMTLPIFLRIVALGFLEPVLDQNLYNMGMKMTSTTFASATVNVLPAITFIMALIFRLESINWRKFHSVAKVIGTVITVSGAMVMTLYKGPAFQIIKGGGAINHHGSSNTDEPSDQNWILGTIMLISSCASWAGFFILQSFTLKKYPAELSLTAWICLLGIIEGSIASFIFERDMSVWVIGWDSRLLACVYSGVICSGMAYYVQGVVTRERGPVFLTSFSPMCMIITAALGSLVLAEQVHLGSIFGAILIVSGLYTVVWGKSKDRQNTDTGKGEVEGLPIKDGTRTDQSDNFDGIEINVPAKKGAGKIAPPQA. 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02288 387 PANTHER WAT1-RELATED PROTEIN 19 339 IPR030184 GO:0016020|GO:0022857
Seca4g02288 387 SUPERFAMILY Multidrug resistance efflux transporter EmrE 252 337 - -
Seca4g02288 387 Pfam EamA-like transporter family 194 332 IPR000620 GO:0016020
Seca4g02288 387 Pfam EamA-like transporter family 29 152 IPR000620 GO:0016020
Seca4g02288 387 MobiDBLite consensus disorder prediction 338 387 - -
Seca4g02288 387 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 153 - -
Seca4g02288 387 MobiDBLite consensus disorder prediction 339 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02288 Seca-Chr4 38985605 38991232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02288 14 378 Nodulin-like Gene Family AT4G08300 64.754 1.68e-170 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02288 - - gmx:100811114 670.233