Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02280 ATGACAAAGGCAAAGCCTTATTTGTTATCGGTGGGATTGCAATTTGGGTTCGCAGGAGCATACATATTCTCCATGGCCAGTCTCAATCATGGAATGAATCGTTTTGTGTTCATTGTTTATCGCAATGCCATTGCTGCATTAGCCCTCGCTCCTTTTGCATTCATTTTTGAAAGGAAAATTAGGCCAAAGATGACAATCACTGTCTTTATGCAGATAATGGCGCTCGCATTTTTGGAGCCAGTGATTGACCAAGGATTCACTTTCTTGGGAATGCAATATACCTCAGCATCATTTGCATCTGCTTTGATTAATGCTGTTCCCTCTGTCACCTTTGTGCTAGCCGTTATTCTCAGGTTAGAGCGTATAGATATGAAGAAGATTCGGAGCGTAGCGAAGGTGATGGGGACGTTGGTAACCTTTGGAGGCGCTTTGTTAATGACACTTTACAAAGGCCCTCAAATCCACCTTTTCTATTCTCCAAATACAACCCAGCAACATGGAACTCACTCCCCTCAGGCTCTCAAACACTGGCTATCTGGCACTCTCTTTCTACTCCTCGGTTGTGTCGCTTGGTCATCTTTCTTCATTTTACAGTCCATAACATTGAAAAGGTATCCGGCAGAAATGTCACTGTCCTCGTTGATATGCTTAGTGGGTGCTGTGCAAGCTTTCCTGGTGGCATTGGTGGCGGAGCATCACGCTGGGATTGCCGCATGGGCCATTGGTTGGGACTTTAGGCTCTATGGTCCTCTGTACACGGGAATAGTTACCTCAGGAATTACATATTATGCACAAGGGTTGGTATTGCAAAGCAGAGGCCCAGTATTCCTCACAGCTTTTAATCCCCTTTGCATGGTCATCACTTCTGCTTTAGGATCCTTCCTTTTCGGAGAGCAACTTCACTTGGGCAGTATCATTGGAGCCATCATTATCGCAATGGGTCTTTATTCTGTGGTGTGGGGTAAAGGCAAAGACCATTCAGACACTACGCCACCATCGCCTACAGCAAAGCAAACAGAGACACAACAGCAGCTGCCAATTACTTCATCTGAAATTGCCTAA 1062 0.4529 MTKAKPYLLSVGLQFGFAGAYIFSMASLNHGMNRFVFIVYRNAIAALALAPFAFIFERKIRPKMTITVFMQIMALAFLEPVIDQGFTFLGMQYTSASFASALINAVPSVTFVLAVILRLERIDMKKIRSVAKVMGTLVTFGGALLMTLYKGPQIHLFYSPNTTQQHGTHSPQALKHWLSGTLFLLLGCVAWSSFFILQSITLKRYPAEMSLSSLICLVGAVQAFLVALVAEHHAGIAAWAIGWDFRLYGPLYTGIVTSGITYYAQGLVLQSRGPVFLTAFNPLCMVITSALGSFLFGEQLHLGSIIGAIIIAMGLYSVVWGKGKDHSDTTPPSPTAKQTETQQQLPITSSEIA. 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02280 353 SUPERFAMILY Multidrug resistance efflux transporter EmrE 224 324 - -
Seca4g02280 353 MobiDBLite consensus disorder prediction 326 353 - -
Seca4g02280 353 SUPERFAMILY Multidrug resistance efflux transporter EmrE 40 150 - -
Seca4g02280 353 PANTHER WAT1-RELATED PROTEIN 6 332 IPR030184 GO:0016020|GO:0022857
Seca4g02280 353 MobiDBLite consensus disorder prediction 328 353 - -
Seca4g02280 353 Pfam EamA-like transporter family 179 319 IPR000620 GO:0016020
Seca4g02280 353 Pfam EamA-like transporter family 9 147 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02280 Seca-Chr4 38887855 38891878 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02280 1 350 Nodulin-like Gene Family AT4G08300 47.309 5.91e-121 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02280 - - gmx:100812537 572.778