Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02274 ATGGTAAAGTCAGAGCACAAGAAGATCAAAACAGAACCATCAAAGGCAATGAGATCTTTATCCTCATCATCAGCATCAGAATCATCAGATATCAAGAAGAAGAAGTACAAAGGAGTCAGAATGAGGAGCTGGGGGTCATGGGTATCAGAGATTAGAGCACCAAATCAGAAAACAAGAATATGGTTAGGTTCTTATTCAACCCCAGAAGCAGCAGCCAGAGCCTATGATGCTGCACTTCTATGCCTTAAAGGGTCCTCAGCAAATCTCAATTTCCCTTTAAATTCTAATTCTCAATACATTCCTCAAGATACTTCCATGTCCCCAAAATCAATCCAAAGAGTTGCTGCTGCTGCTGCTGCTGCTAATAGTTTCATTCAAAATGCCAGCACTAGCACTAGCACTAGCACTCCCTCTTCTTCACCTCCTCCCTCAACCTCATCATCATCAATGGTCTCTTCTCCCTCTGATCAAATGGATGATGATGTCTCACTCATGTCATCTTTTGAAGCCTATGATCAAGCTAATGAATCAATGGCTGTGATGGAACCTTGGTATAACAACTTAGATGGTTTACAATCCCCTAAATATGTTGATCAGATGTTAAGTGCTTCTTTCTTTGATATTGATTCCTCCCATCTGCTTGATGATCTGTATGAAGAAAGTGACATTCGTTTGTGGAGCTTCTGCTGA 690 0.4101 MVKSEHKKIKTEPSKAMRSLSSSSASESSDIKKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTPEAAARAYDAALLCLKGSSANLNFPLNSNSQYIPQDTSMSPKSIQRVAAAAAAANSFIQNASTSTSTSTPSSSPPPSTSSSSMVSSPSDQMDDDVSLMSSFEAYDQANESMAVMEPWYNNLDGLQSPKYVDQMLSASFFDIDSSHLLDDLYEESDIRLWSFC. 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02274 229 CDD AP2 34 92 IPR001471 GO:0003700|GO:0006355
Seca4g02274 229 Gene3D AP2/ERF domain 34 94 IPR036955 GO:0003700|GO:0006355
Seca4g02274 229 MobiDBLite consensus disorder prediction 1 36 - -
Seca4g02274 229 MobiDBLite consensus disorder prediction 128 159 - -
Seca4g02274 229 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 21 170 - -
Seca4g02274 229 Pfam AP2 domain 35 84 IPR001471 GO:0003700|GO:0006355
Seca4g02274 229 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Seca4g02274 229 FunFam ethylene-responsive transcription factor ERF014-like 34 94 - -
Seca4g02274 229 SUPERFAMILY DNA-binding domain 35 93 IPR016177 GO:0003677
Seca4g02274 229 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Seca4g02274 229 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Seca4g02274 229 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02274 Seca-Chr4 38747216 38747905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02274 36 228 AP2-EREBP Transcription Factor Family AT1G21910 50.251 4.78e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca4g02274 AP2 3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02274 - - gmx:100819512 303.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02274 4 38747216 38747905 Seca4g02274 4 38747216 38747905 ECH