Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02271 ATGTCATTGAGTCCTCCAAGAGAAAGAAACAATGACCAAGCCAGGACCTACCACCTCTACTGGTGCTTCCAATGCAACCGCACGGTCCGGTTAGCACCCTCAAACCCCTCCGAGATCATGTGCCCACGCTGCTTCGGCCAATTCATCTGCGAAATCAACATCCCAAGGCCAAGACTCCTCGTCGATTTCACCACCCACGATCCTTCCCCAGAAGCGCGTTTGCTCGAAGCACTTTCCCTCATGCTCGAACCACCCATTCGTCGCTTCAACGGTCGCCCCCAACCAACACCCAACGAAGTCCCCGTCGTGGTTCACACAACCCGTCCCCGAAACCGCGGTTCGGACTCAACCCGACCCGAAGTATCGGTACCCGAACCCGGTATCCAACACCGTCCGCGCACGTGGATCATTCTCCAACCCATAGATCCATCTTCCAACGCGTTCGAACCCATGCGACAGAACCCGAATCCCATCCCACGCGTTGCGGATGCGAGAGACTACTTTTTCGGGCCGGGTCTGAACGAGCTGATCGAACAGTTGACGGAGAATGACCGGCCAGGTCCGGCGCCGGCGGCGGAAAGAACGATTGAAGCGATTCCGACGGTGAAAATAGTGAGCAGTCATCTGAAGGAGAATTCGCAATGTCCTGTTTGTCAGGAAGAATTTGAAGTGGGTGGTGAAGCAAGGGAACTTCCATGCAAACATATATATCACTCTGAATGCATTGTTCCTTGGTTGAGGCTTCACAATTCTTGCCCCGTTTGTCGGAAGCAGATACCTGATTCTTCTTCTTCTTCTTCGGAGGGGGAAGAGTGTATTGATGGAGAAAGCAGGTTGCGTAGGTGTTTGAGGTGGAGCCGTCTTTCATCTCTTTGGCCTTTCCATGGAAGGTATCCACGGGTTCACCCTGAACGAGACAATGCTGCTGCTTCTTCTTCTTCCTCAAGGGGTGATGCTTAA 960 0.5333 MSLSPPRERNNDQARTYHLYWCFQCNRTVRLAPSNPSEIMCPRCFGQFICEINIPRPRLLVDFTTHDPSPEARLLEALSLMLEPPIRRFNGRPQPTPNEVPVVVHTTRPRNRGSDSTRPEVSVPEPGIQHRPRTWIILQPIDPSSNAFEPMRQNPNPIPRVADARDYFFGPGLNELIEQLTENDRPGPAPAAERTIEAIPTVKIVSSHLKENSQCPVCQEEFEVGGEARELPCKHIYHSECIVPWLRLHNSCPVCRKQIPDSSSSSSEGEECIDGESRLRRCLRWSRLSSLWPFHGRYPRVHPERDNAAASSSSSRGDA. 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02271 319 ProSiteProfiles Zinc finger RING-type profile. 215 256 IPR001841 -
Seca4g02271 319 FunFam E3 ubiquitin-protein ligase RING1-like 179 262 - -
Seca4g02271 319 Pfam Ring finger domain 214 256 IPR001841 -
Seca4g02271 319 SUPERFAMILY RING/U-box 195 261 - -
Seca4g02271 319 MobiDBLite consensus disorder prediction 107 126 - -
Seca4g02271 319 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 146 260 - -
Seca4g02271 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 262 IPR013083 -
Seca4g02271 319 SMART ring_2 215 255 IPR001841 -
Seca4g02271 319 Pfam zinc-ribbon 20 52 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02271 Seca-Chr4 38722266 38723249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02271 187 302 C3H Transcription Factor Family AT1G68180 42.975 2.77e-25 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02271 K11982 - gmx:100787399 409.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02271 4 38722266 38723249 Seca4g02271 4 38722266 38723249 ECH