Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02266 ATGTACATGGAAATGGACATGGACATCGACCTCGACTTCTCCGGACACAGCACCCTCAGTACCAACACCCCAACTTCCGAAGACGACTACGGTTGCAACTGGAACCACTGGTCCCCCATCGTCAACTGGGACGCCTTCACCGGCACCCAAGACGACTTCCACCACCTCATGGACTCCATGATGGACGACGGTGCCGCCGCCGTGGTTCCTCTCAGCCCCGACCAGGGCACATCCACCTCATCAGAGGAGGAGGAAGAAGCAGCACCAGTGGGTGACGATTTGAAAGGCCTGAGGCTGGTGCACCTTTTGATGGCAGGCGCGGAGGCCCTAACGGGTGCTAACAAGAGCCGCGACCTGGCTCGAGTGATATTGGTTCGGCTCAAGGAATTGGTGTCTCACTCCCACGGCACCAACATGGAAAGACTCGCTGCTTATTTCACCGAGGCGCTCCACGGCCTGCTAGAAGGCGCAGGGGGTGCGCACAATAACAACAAACATTACGTCATCGGTGGTGGTGGGGCCCATGACCATCAAAACGACATCCTCGCAGCTTTCCAACTGCTTCAGGACATGTCTCCCTACGTCAAGTTCGGCCACTTCACCGCCAACCAGGCCATTTTAGAGGCCGTGGCCCACGAACGTCGGGTCCACATCGTCGATTATGACATCATGGAAGGGGTCCAATGGGCCTCCCTTATGCAGGCCCTCGCCTCCAATAACAACGGCCCACACCTTCGCATCACTGCATTGTCCCGAACCGGCACTGCACGGAGGTCAATCGCTACCGTGCAAGAGACCGGGCGGCGGTTAACGGTGTTCGCGGCCTCCATCGGGCAGCCGTTTTCTTTTCATCACTGTAGGTTGGATCCTGACGAAAGGTTTCGGCCCTCCGCGGTTAAGCTGGTTCGAGGAGAGGCCTTGGTGTTCAACTGCATGCTGAATCTGCCTCACCTCAGTTACCGCGCGCCAGATTCGGTTGCGTCGTTTCTGAGTGGAGCCAAGGCGTTGAGGCCGAGGCTGGTGACGCTGGTGGAGGAGGAAGTGGGGTCTGTTCTTGGTGGGTTTGTGGAGCGGTTCATGGATACGCTACATCACTACTCAGCGGTGTTTGACTCGCTGGAGGCTGGGTTTCCGATGCAAAGTCGGGCCAGGGCGTCAGTGGAACGGGTTTTCTTGGGCCCCCGGATAGCGGACTCGGTGGCCCGGATCTACCGGACGGGTGGAGAGGAAGAGAGAAGGTCGTGGGGGGAGTGGTTGGGTGCGGCTGGGTTTAGGGGAGTTTCCATAAGTTCTGCCAATCATTGCCAAGCAAACTTGTTGTTGGGTCTTTTCAATGATGGGTACAGGGTGGAGGCGTTGGGTAGTCATAAGTTGGTATTGCATTGGAAATCAAGGCGTATGCTTTCAGCCTCCCTTTGGAGTTGTTCAGAATCTGATTCCTAA 1443 0.5703 MYMEMDMDIDLDFSGHSTLSTNTPTSEDDYGCNWNHWSPIVNWDAFTGTQDDFHHLMDSMMDDGAAAVVPLSPDQGTSTSSEEEEEAAPVGDDLKGLRLVHLLMAGAEALTGANKSRDLARVILVRLKELVSHSHGTNMERLAAYFTEALHGLLEGAGGAHNNNKHYVIGGGGAHDHQNDILAAFQLLQDMSPYVKFGHFTANQAILEAVAHERRVHIVDYDIMEGVQWASLMQALASNNNGPHLRITALSRTGTARRSIATVQETGRRLTVFAASIGQPFSFHHCRLDPDERFRPSAVKLVRGEALVFNCMLNLPHLSYRAPDSVASFLSGAKALRPRLVTLVEEEVGSVLGGFVERFMDTLHHYSAVFDSLEAGFPMQSRARASVERVFLGPRIADSVARIYRTGGEEERRSWGEWLGAAGFRGVSISSANHCQANLLLGLFNDGYRVEALGSHKLVLHWKSRRMLSASLWSCSESDS. 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02266 480 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 80 469 IPR005202 -
Seca4g02266 480 ProSiteProfiles GRAS family profile. 90 474 IPR005202 -
Seca4g02266 480 MobiDBLite consensus disorder prediction 68 91 - -
Seca4g02266 480 Pfam GRAS domain family 99 473 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02266 Seca-Chr4 38564925 38566367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02266 69 479 GRAS Transcription Factor Family AT5G41920 34.606 9.62e-56 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca4g02266 GRAS 4.4e-99 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02266 - - tpra:123896871 758.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02266 4 38564925 38566367 Seca4g02266 4 38564925 38566367 ECH