Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02258 ATGAAACTAAAACTTATCCTAAGATTTTCTTTCACTTTCCTTTTGTTCACATCCATCTCTGCTTTAACCTTTTCAGATCATATCAATCCAAATTTCTCTGCTTCATATCTTCAATTCATTAGTGACACTGGCACCTTCTTGTTGTCTAGCAATAAAACATTCAAGGCTGCAATATTCAATCCTGGTGGTCAACAAACCAGTTTCTATCTGTGTGTCATTCATGTTGCATCCAGCACCATCATTTGGTCTGCTAACCGTGATTCCCCCATCTCAGATTCTGGTAAAATGAATCTAACTGCCAAAGGGATCACAATTTTTGATGAAGATGGAAACATCAAATGGTCAACACCACCACTAAAATCACCAGTAAATAAGCTTTCACTGACTGAGATGGGAAATCTTGTCTTACTTGATAAGTCCAATAATTCTCTTTGGGAAAGCTTCCAGCATCCAACTGACACAATTGTTATTGGACAGCGTTTACCTGTTGGTGCTTCCCTTTCAAGTGCTGCATCCAATTCAAACTTGTCAACAGGAAGTTACAATTTTACAATTACTTCCTCTGATGCAATACTTCAATGGTATGGTCAAACATACTGGAAATTGTCTATGGATACAAAAGTCTATAAGAATTCAAATAATATGGTGGAATACATGGCAATAAACAGCACAGGTTTTTATTTCTTTGGAAATGATGATATAGTGTCTGTCTATCAAGTTGGCTTGCCATTGGCTAATTTCCGAATTGCAAAATTGACTTCCTCTGGCCAATTTACTCTTAGCAGCTTCTCTGGCACTAACTGGAAGCAGGAATTTGTGGTGCCAGATGATGGTTGTCAAACACCCTTTGTTTGTGGTAGAGCAGGATTATGTACTCATAACACTGTTTCCTCTTCAGCTATTTGCTCTTGTCCCCCAATTTTTCATGTAGGCTCAGGTAATTTTGGTGGTTGTGTGCCAAGTGATGGATCTTATTCTTTGCCACTTGCTTGTTCCTCTACTGATTATGGCAATCAATCAAATTCTTCAGTAGTTTCATTTTTGAAAATAGGGAATGGTGTTCAGTACTTTAGCAATATTTACTCTGATCCAGTTATGTATGGAGTGAATTTATCTGCCTGTCAAGATTTTTGTTCTGATAACTGTTCCTGTTTGGGAATTTTCTATAAAAACTCTTCTGGTTCTTGCTTCATGATTGCAAATGGGTTGGGATCCATTCAGTCAAGTAATGCAGGTGGAAGTGATCTGTTTGGCTTCATTAAAGCTATTGCTGCATCAAAAACTACTAGTGATGATACTAATGATGGACAAACTTCTGAAAATGGGGGGTTTCCTGTGGCTGCTGCAGTGCTATTACCCATTGCTGGGTTCATTCTTTTTCTTGTCCTAGTTTTCCTTGTGTGGAGAAGGTTGAAACTGTCAAAGAAGCAAGAATTGAAATTAGGGAAACCAAATTCACATTCTTCAGGGGACCTAGATGCCTTCTACATTCCAGGATTACCTACAAGGTTTGACTATGAAGAACTTGAGAAGGCTACTGATAATTTCAAGACTCTAATTGGGTCAGGTGGGTTTGGTGCTGTATACAAGGGTGTGCTTCCTAATAAGACTATTGTGGCAGTGAAGAAAATAGTCAACATTGGAATTCAAGGGAAAAAGGATTTCTGCACTGAGATTGCTATTATTGGAAATATTCACCATGTTAATTTGGTGAGACTGAAAGGTTTCTGTGCTCAAGGGAGACACCGTTTGTTGGTTTATGAGTACATGAACCGTGGATCACTGGATCGCCACCTCTTTGGTGGTGGACCAGTTTTGGAATGGCAAGAGAGGTTTGATGTGGCAATTGGAACAGCACGTGGACTTGCTTATCTACACAGTGGTTGTGAGCAAAAGATTATTCACTGTGATATCAAACCAGAGAACATTCTCTTGCAAGATCAATTTCAGGCTAAGATATCTGATTTTGGACTCTCAAAACTCCTTAGCCCTGAACAGTCTGGTTTCTTCACAACAATGAGAGGCACTCGTGGCTATCTTGCTCCAGAGTGGCTTACTAACTCTGCAATTACAGAAAAGACTGATGTGTACAGTTTTGGAATGGTACTTCTTGAACTGGTCAGTGGAAAGAAGAATTGTTCTTTTAAATCAAGAAGTCATAGCATGGAAGACAGCAACAGTGGTGGTGGTGGTGGCAATTCATCAAACTCATCAACTTCAGGATTGGTTTATTTTCCACTATTTGCATTAGAGATGCATGAGCAAGGGAGTTACCTGGAGTTGGCTGATCCAAGGCTAGAAGGACGTGTTACAAATGATGAGGTGGAGAAACTAGTTCGTATTGCCTTGTGTTGTGTTCATGAAGAACCAGCACTTAGACCAAACATGGTTACTGTTGTTGGCATGTTGGAAGGTGGGACTCCATTGCCGCAGCCAAGGATGGAATCTTTGAATTTCTTGCGGTTTTATGGGCGTAGGTTTACTGAGGCTTCCATGATTGCAGAAGAAGATGAGTTTGGCTCTTTGATGCATCAACAAGCACGTAATTCAACAACAGGGGGTTCACAAAATGGTTTTTCATACATATCTTCACAAAATATCTCTGGGCCAAGATAG 2616 0.3976 MKLKLILRFSFTFLLFTSISALTFSDHINPNFSASYLQFISDTGTFLLSSNKTFKAAIFNPGGQQTSFYLCVIHVASSTIIWSANRDSPISDSGKMNLTAKGITIFDEDGNIKWSTPPLKSPVNKLSLTEMGNLVLLDKSNNSLWESFQHPTDTIVIGQRLPVGASLSSAASNSNLSTGSYNFTITSSDAILQWYGQTYWKLSMDTKVYKNSNNMVEYMAINSTGFYFFGNDDIVSVYQVGLPLANFRIAKLTSSGQFTLSSFSGTNWKQEFVVPDDGCQTPFVCGRAGLCTHNTVSSSAICSCPPIFHVGSGNFGGCVPSDGSYSLPLACSSTDYGNQSNSSVVSFLKIGNGVQYFSNIYSDPVMYGVNLSACQDFCSDNCSCLGIFYKNSSGSCFMIANGLGSIQSSNAGGSDLFGFIKAIAASKTTSDDTNDGQTSENGGFPVAAAVLLPIAGFILFLVLVFLVWRRLKLSKKQELKLGKPNSHSSGDLDAFYIPGLPTRFDYEELEKATDNFKTLIGSGGFGAVYKGVLPNKTIVAVKKIVNIGIQGKKDFCTEIAIIGNIHHVNLVRLKGFCAQGRHRLLVYEYMNRGSLDRHLFGGGPVLEWQERFDVAIGTARGLAYLHSGCEQKIIHCDIKPENILLQDQFQAKISDFGLSKLLSPEQSGFFTTMRGTRGYLAPEWLTNSAITEKTDVYSFGMVLLELVSGKKNCSFKSRSHSMEDSNSGGGGGNSSNSSTSGLVYFPLFALEMHEQGSYLELADPRLEGRVTNDEVEKLVRIALCCVHEEPALRPNMVTVVGMLEGGTPLPQPRMESLNFLRFYGRRFTEASMIAEEDEFGSLMHQQARNSTTGGSQNGFSYISSQNISGPR. 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02258 871 FunFam Serine/threonine-protein kinase 590 811 - -
Seca4g02258 871 CDD B_lectin 43 151 IPR001480 -
Seca4g02258 871 MobiDBLite consensus disorder prediction 847 871 - -
Seca4g02258 871 Pfam Protein kinase domain 517 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02258 871 Gene3D - 38 149 IPR036426 -
Seca4g02258 871 FunFam serine/threonine-protein kinase PBS1-like 484 589 - -
Seca4g02258 871 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 40 812 - -
Seca4g02258 871 Gene3D Phosphorylase Kinase; domain 1 494 589 - -
Seca4g02258 871 SMART ntp_6 342 420 IPR003609 -
Seca4g02258 871 Pfam D-mannose binding lectin 79 162 IPR001480 -
Seca4g02258 871 Pfam S-locus glycoprotein domain 231 308 IPR000858 GO:0048544
Seca4g02258 871 SUPERFAMILY alpha-D-mannose-specific plant lectins 68 202 IPR036426 -
Seca4g02258 871 SUPERFAMILY Protein kinase-like (PK-like) 492 803 IPR011009 -
Seca4g02258 871 ProSiteProfiles Bulb-type lectin domain profile. 31 149 IPR001480 -
Seca4g02258 871 ProSitePatterns Serine/Threonine protein kinases active-site signature. 633 645 IPR008271 GO:0004672|GO:0006468
Seca4g02258 871 Gene3D Transferase(Phosphotransferase) domain 1 590 809 - -
Seca4g02258 871 CDD STKc_IRAK 520 805 - -
Seca4g02258 871 ProSiteProfiles Protein kinase domain profile. 514 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02258 871 PIRSF SRK 1 856 IPR024171 GO:0004674
Seca4g02258 871 SMART blect_4 38 151 IPR001480 -
Seca4g02258 871 ProSitePatterns Protein kinases ATP-binding region signature. 520 543 IPR017441 GO:0005524
Seca4g02258 871 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 44 149 - -
Seca4g02258 871 SMART serkin_6 514 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02258 871 CDD PAN_AP_plant 339 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02258 Seca-Chr4 38455380 38457995 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02258 454 812 Receptor kinase-like Gene Family AT5G20050 39.683 2.87e-77 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca4g02258 Pkinase 1.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02258 - - psat:127084110 1266.52