Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02246 ATGGATGGGAAGGCTAACCTTCCGATCAAGCCAGATTCCTCCTCCCCGGACTTCCTCCGCCACGTTCAAGCCGCCTTGAAGCGTCATCGTCCTCTCGGTGCATTGCAGTCCAATTGTATAAGGCCAAGGCGCACGCTGCTTCCCCAATCACTCAGAAACAACGCTGCTTCTGATGATACATCATCCATCACGCCTCCGTCAATTTCGTCTGAAAGCAGCACTGTCAATCCTTCTCAAAATGTAGATGATGCTCACAAGAAAGTCCACTTTTCAATTCCTACCAACACTGCTCCACAGGGGGGCCATGATGGAAAGGCCACTGAGTTGGAGAACTTGTCATCTTATATGAGTTCACTTGGATTCACAGAAATGGAGTGGGTTGAAAGCAACCAGCTCGAAGCGTCAATTGGATTCAACCAAGACCCAAAGAACCCGAAATTTCAGCAGGCAGAGCATGAGCAAGGCTTGAGATCTGATGGAGTAGTAAGTGTGTTACCAAAACGAACTGTGGTTTCTCGGGATCATCTTCAGCAATTCAGAAACTTTTTAAGTCAGCCAGCGACACAATCTTCCGTGGCAGGACCTTCGTGTGCTACGACTACCTCGGTCCATTCAACTTCAGCTCCCATGTTAAACTCAACAACCCGACTTCTAGATAATGGCTCATGTGTGGCTGCTGAACCGTTAGGGGAGCTTGATGTTAATCCTAATGCTATAAATGAAACAGTTATGGAATCATCAAATGCTTCCTTGAAAGAAACCAATAGAATGTCGGTTGATAAGGCAGCAATTGCAGTTCAAGCTTCTGATTCTTGTGTTGATGTGGCATTTAAGGAGAGTGATCATTCTAAGGAGCAACAAGGATGCGTGTTAAAAGAAACCAGCAATTCAAAATACACTTCTTGTGATGATGACAAGTTGGCTAAAGGGAAAGAGCCTGCAGATGTTGCCAATGCACAAACTCAGGCTCCAATGCCAAAATTGTCATCTTCAGATGTGACATTGGAGTCTTCTAAGTTAGAAAAGCGTGAGAAAGTTGCAAGTGCTAAAGTTTCCTCAGCCGCTCGCAAAAGAACCTATGACCCTGATTTGTTTTTTAAAGTCAATGGCAAGCTTTATCAACGTCTTGGCAAGATAGGTAGTGGTGGTAGCAGTGAGGTACACAAAGTGATTTCGTCAGACTGTAGGATCTATGCACTTAAAAAGATCAAGCTCAAGGGTCGTGATTATGCAACTGCATATGGGTTTTGTCAAGAGATTGAGTATCTAAACAGGCTGAAAGGAAAGGATAATATCATACAGCTTACAGATTATGAGGTGACTGACAAGGCTTTGCATGAAGAAGTTATGAAAGGCTCCTTCACTAACAAGGATGGCCGAGTCAAGGATGATGGATATATATACATGGTACTTGAATATGGAGAAATTGATCTAGCTCACATGTTGTCTCAGAAATGGAAAGAACTGGATGGATCCAACCAGACCATAGATGAGAACTGGCTCCGATTTTATTGGCAGCAAATTCTTCAAGCTGTCAACACTATTCATGAGGAGCGTATTGTACACTCTGACTTGAAGCCAGCCAACTTCCTCCTTGTCAAAGGTTCCCTAAAACTGATTGATTTTGGTATAGCCAAAGCAATAATGAGTGATACAACTAACATCCAAAGGGATTCACAGGTGGGTACTCTAAGTTACATGTCTCCGGAGGCATTTATGTGCAATGAGACTGATGCGAGCGGAAACATTATAAAATGTGGTCGGCCATCAGATATCTGGTCCCTGGGCTGCATCCTATATCAAATGGTATATGGGAGAACACCTTTCTCTGAATACAAGACATTTTGGGCCAAATTCAAAGTTATAACTGATCCAAATCATGAAATTACGTATGAACCTGTTTCAAACCCATGGCTTATTGATCTTATGAAGAGGTGTCTAGCATGGGATCGCAATCAAAGGTGGAGAATTCCTCAGCTACTCCAACATCCTTTTCTTGTTCCTCCTGTACCACATCATCCATCTTTGTCCCAAGACCATAGCTGTAAATTGCTACAACTTATTGCTGAAACTTGTACATATGACCCAGAAGCATCCCAGCTGTGTTGTCAGCTCCAACGGCTACTTGGTGATCCACTTGAGTTAACAACTCCTCACTCACTAAATTCACGAGATCAACAACGAAAACTGCTGTCCCAAATGTCACAAATATGTATTCAGCTGCAGGAACGTTTGGCAAATACTGATAACAAGTAG 2256 0.4322 MDGKANLPIKPDSSSPDFLRHVQAALKRHRPLGALQSNCIRPRRTLLPQSLRNNAASDDTSSITPPSISSESSTVNPSQNVDDAHKKVHFSIPTNTAPQGGHDGKATELENLSSYMSSLGFTEMEWVESNQLEASIGFNQDPKNPKFQQAEHEQGLRSDGVVSVLPKRTVVSRDHLQQFRNFLSQPATQSSVAGPSCATTTSVHSTSAPMLNSTTRLLDNGSCVAAEPLGELDVNPNAINETVMESSNASLKETNRMSVDKAAIAVQASDSCVDVAFKESDHSKEQQGCVLKETSNSKYTSCDDDKLAKGKEPADVANAQTQAPMPKLSSSDVTLESSKLEKREKVASAKVSSAARKRTYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCRIYALKKIKLKGRDYATAYGFCQEIEYLNRLKGKDNIIQLTDYEVTDKALHEEVMKGSFTNKDGRVKDDGYIYMVLEYGEIDLAHMLSQKWKELDGSNQTIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLSYMSPEAFMCNETDASGNIIKCGRPSDIWSLGCILYQMVYGRTPFSEYKTFWAKFKVITDPNHEITYEPVSNPWLIDLMKRCLAWDRNQRWRIPQLLQHPFLVPPVPHHPSLSQDHSCKLLQLIAETCTYDPEASQLCCQLQRLLGDPLELTTPHSLNSRDQQRKLLSQMSQICIQLQERLANTDNK. 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02246 751 CDD PKc_Mps1 371 666 IPR027084 -
Seca4g02246 751 Gene3D Transferase(Phosphotransferase) domain 1 487 669 - -
Seca4g02246 751 SMART serkin_6 373 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02246 751 ProSitePatterns Protein kinases ATP-binding region signature. 379 401 IPR017441 GO:0005524
Seca4g02246 751 MobiDBLite consensus disorder prediction 46 81 - -
Seca4g02246 751 ProSiteProfiles Protein kinase domain profile. 373 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02246 751 SUPERFAMILY Protein kinase-like (PK-like) 367 673 IPR011009 -
Seca4g02246 751 FunFam serine/threonine-protein kinase mph1 isoform X1 487 669 - -
Seca4g02246 751 Pfam Protein kinase domain 373 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02246 751 Gene3D Phosphorylase Kinase; domain 1 366 452 - -
Seca4g02246 751 PANTHER MIXED LINEAGE PROTEIN KINASE 61 700 - -
Seca4g02246 751 FunFam serine/threonine-protein kinase mph1 isoform X2 366 453 - -
Seca4g02246 751 ProSitePatterns Serine/Threonine protein kinases active-site signature. 520 532 IPR008271 GO:0004672|GO:0006468
Seca4g02246 751 MobiDBLite consensus disorder prediction 316 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02246 Seca-Chr4 38280043 38284335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02246 379 667 MAP Kinase Kinase Kinase AT4G08470 29.097 2.88e-23 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Seca4g02246 Pkinase 2.2e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02246 K08866 - gmx:100788990 1082.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02246 4 38280043 38284335 Seca4g02246 4 38280043 38284335 ECH