Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02244 ATGGAGGATTTGCATAGTGCTCTGAAGGATCGTAATTTAGCAGTTTCCACCGTCCCAGAAAAGGGTCGCTCTCTCTTTGCTACAAGGGATTTCTACCCAGGGGAAGTGATTATAAGTCAAGAGCCTTATATTTGTGTTCCAAATAACTCCTCCCAGAAAAGGTGTGATGGTTGTTTCACAGCAACTAACCTTAACAAGTGCTCACGTTGCCAAGCTGTTTGGTATTGTGGAACCACATGTCAGAAGTCAGAATGGAAGTTGCATCGTCTTGAATGTGATGCCCTCTCGAGGCTAGACAGGGACAAGAGAAAATCTGTCACACCATCCATAAGGCTGATGGTGAAACTTTATCTTCGAAGAAAGTTGCAAAATGATAAGATCATTCCAAGCACTGCTATGGACAATTACAACTTGGTGGAGGCATTAGTAGCTCACATGTCTGACATCACTGAGGAGCAGCTGGTGCTGTATGCACAGATGGCTAATCTTGTAAACTCAATACTTCAATGGCCTGAAATCAATATAAAAGAGATTGCAGAAAATTTTTCTAAGTTTGCATGTAATGCACATACCATTTGTGACAGTGAGTTGAGACCTCTGGGAACTGGATTGTATCCTGTTATTTCCATTATCAATCACAGCTGCTTGCCCAATTCGGTGTTGGTTTTTGAGGGAAGGTCAGCAGTGGTACGTGCTGTGCAGCATGTACCCAAAGGAACTGAAGTACTGATAAGTTATATAGAGACAGCTGGAAGCACTTTGACTCGACAAAAGGCTCTCAAAGAGCAGTACCTATTCACTTGTACTTGTCCCCGCTGTTCTAAAATGTTAGTTTTGAAGGGTCAGTATGATGATATCCGAGACAATGCAATTCTAGAAGGATACCGATGCAAAAATGAAAAATGTGATGGTTTCTTGCTTCGTACAACTGATTATGAAGAAGCTATTTCCATATATAAAATGATTGAGAAACTGCAAACAAAACTGTACCATCCTTTGTCAATCAACTTAATGCAAACTCGAGAGAAGATTTTGAAGGTAAGCTCCTCCTTGTAG 1056 0.411 MEDLHSALKDRNLAVSTVPEKGRSLFATRDFYPGEVIISQEPYICVPNNSSQKRCDGCFTATNLNKCSRCQAVWYCGTTCQKSEWKLHRLECDALSRLDRDKRKSVTPSIRLMVKLYLRRKLQNDKIIPSTAMDNYNLVEALVAHMSDITEEQLVLYAQMANLVNSILQWPEINIKEIAENFSKFACNAHTICDSELRPLGTGLYPVISIINHSCLPNSVLVFEGRSAVVRAVQHVPKGTEVLISYIETAGSTLTRQKALKEQYLFTCTCPRCSKMLVLKGQYDDIRDNAILEGYRCKNEKCDGFLLRTTDYEEAISIYKMIEKLQTKLYHPLSINLMQTREKILKVSSSL. 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02244 351 Gene3D - 105 189 - -
Seca4g02244 351 Pfam MYND finger 55 92 IPR002893 -
Seca4g02244 351 ProSitePatterns Zinc finger MYND-type signature. 55 92 IPR002893 -
Seca4g02244 351 Gene3D - 54 104 - -
Seca4g02244 351 SMART set_7 11 253 IPR001214 GO:0005515
Seca4g02244 351 ProSiteProfiles Zinc finger MYND-type profile. 55 92 IPR002893 -
Seca4g02244 351 SUPERFAMILY SET domain 10 246 IPR046341 -
Seca4g02244 351 ProSiteProfiles SET domain profile. 11 247 IPR001214 GO:0005515
Seca4g02244 351 Gene3D SET domain 24 273 IPR046341 -
Seca4g02244 351 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 14 342 - -
Seca4g02244 351 Pfam SET domain 22 246 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02244 Seca-Chr4 38217970 38223036 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca4g02244 SET 1.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02244 K11426 - gmx:100789518 575.089