LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g02234	ATGGGCTTCCGGATTCAAACCAATGGGTCTCTCGAACTCGAAGAGATAAGACTATGGCTATGGCGGATACTCCATTTTACAGACGCAGTTGCAGTCTTGCAGAGTGAAGAAAAGATGGCACAAACGCTGGCAATGCCTGTGGCACCCTCACTCGCTGTCATCTGCAATGGCCACTTCTCCAACAGAGTCTCTTTCCCTGTTCTGAGCCCTCCCAACCCTAAGGTTCACGGGTTAAGCATCCAGTGCGTTCGTGTTGGGGGTGTGGAGATTCCAAACAACAAGCGAATTGAGTATTCTCTGCAGTACATTCATGGAGTTGGGAGGAGCAGAGCGCGACAAATCCTCTGTGACATCAACATGGACAACAAAATCACCAAGGACCTCTCTGAGGAGGAGCTCATTACTCTCAGAGATGAAGTGTCCAAATACATGATTGAAGGAGACTTGAGACGGTTCAATGCGATTAACATAAAGAGACTGAAGGATATCCAGTGCTACAGAGGAATTAGGCATATTCAGGGGCTTCCCTGTAGAGGACAGCGTACCAAGAACAATTGCAGGACCTTGAAGGGTAAGAAGGTTGCCATTGCAGGGAAGAAGAAAAAGTAA	609	0.4778	MGFRIQTNGSLELEEIRLWLWRILHFTDAVAVLQSEEKMAQTLAMPVAPSLAVICNGHFSNRVSFPVLSPPNPKVHGLSIQCVRVGGVEIPNNKRIEYSLQYIHGVGRSRARQILCDINMDNKITKDLSEEELITLRDEVSKYMIEGDLRRFNAINIKRLKDIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKK.	203

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g02234	202	ProSitePatterns	Ribosomal protein S13 signature.	167	180	IPR018269	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Seca4g02234	202	Gene3D	30s ribosomal protein s13, domain 2	152	202	IPR027437	-
	Seca4g02234	202	Pfam	Ribosomal protein S13/S18	84	188	IPR001892	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Seca4g02234	202	ProSiteProfiles	Ribosomal protein S13 family profile.	85	191	IPR001892	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Seca4g02234	202	NCBIfam	30S ribosomal protein S13	84	193	IPR019980	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Seca4g02234	202	PANTHER	30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18	78	200	-	-
	Seca4g02234	202	FunFam	30S ribosomal protein S13	152	201	-	-
	Seca4g02234	202	FunFam	30S ribosomal protein S13	78	151	-	-
	Seca4g02234	202	Gene3D	-	83	151	-	-
	Seca4g02234	202	SUPERFAMILY	S13-like H2TH domain	83	194	IPR010979	GO:0003676
	Seca4g02234	202	Hamap	30S ribosomal protein S13 [rpsM].	82	198	IPR001892	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g02234	Seca-Chr4	38023363	38024554	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g02234	81	200	Cytoplasmic Ribosomal Protein Gene Family	AT4G09800	30.822	3.78e-07	46.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g02234	K02952		-	jcu:105638882	265.774

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca4g02234	4	38023363	38024554	Seca4g02234	4	38023363	38024554	ECH