Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02233 ATGGCAGCAGCGGCTTCCGTGGACAAGCGTCTGTACAATACTAGCCTCCAACACGACGTCGTTCGGAGCTTTGAGTCAAGCCAGGAGGTAATGCGTGGGATGAAGAAGACACTGGAACCGCTGTTTCTATCCGATTCCTCAAGCGATGAGGAAAATGGAAATAATCTGAAGGAGCTGATTAGAAAGGGAAACACCGAAGTTGAAGCCTCCATCTTCGACCCTCGAGACGAGGGAACCTTGGACCACTGGATCCAACGGAGCGCCTCTCTTATCCGCCTCACAGGAAAGCACCCTTTCAACTCAGAGCCACCACTCTCACGCCTCATGCACTATGGCTTCATCACCCCTGTCCCACTCCACTATGTCCGTAACCATGGGCCCGTTCCCAAGGCCCGTTGGGAAGACTGGACCGTTGAGGTCTGCGGTCTTGTTAAGCGCCCGGCCCGTTTCACCATGGACCAGCTGGTCCACGACTTCCCTAGCCAAGAGTTCCCTGTCACACTCGTCTGTTCCGCTAACCGTCGCAAGGAACTCAACATGGTGAAGCAGAGCATCGGCTTCAACTGGGGACCTGCTGCCACTTCCACTTCTGTGTGGCGCGGTGTACCGTTGAGGACTGTGCTCAAGCGATGTGGGATTTATAGCCGCAATAGTGGGGCCCACTATGTTTGTTTCGAAGGCGCGGATGAACTGCCAGGTGGCGGTGGGTCCAATTACGGAACAAGTATCGTGAGGGAAGTTGCACTGGATCCCTCCCGCGACATCATCCTTGCTTACATGCAAAACGGTGAGCTTTTGGCTCCGGATCATGGGTTTCCATTACGGGTCATAATACCGGGTTTCACCGGTGGCCGCATGGTGAAATGGCTGAAGCGCATCGTTGTCACTAACCATGAATCAGATAGCTATTACCATTACCATGATAACAGAGCACTCCCCTCCCATGTTGATGCCGAGCTTGCCAATGCAGAAGGTTGGCTGTACAAGGCAGAGTATGTCATCAACGAAATGAACATAAACTCGGTGATAACGACCCCGTGCCACGATGAAATTTTGCCCATCAACTCATGGACTACTCAGAGGCCTTATGTACTCAGAGGCTTCGCATATTCCGGGGGTGGGAGAAAGGTGACACGTGTTGAGGTGACAATGGATGGTGGTGAAACGTGGCAAGTATGCAGGTTGGAGCATCCAGAGAAGCCCAATAAATATGGTAAGTCCTGGTGTTGGTGCTTTTGGTGCTTAGAGGTAGAGGTGTTGCACTTGCTTGGAGCCAAGGAGATTGCAGTGCGCGCTTGGGATGAAGCCCTCAACACCCAACCTGAGAAGCTTAATTGGAATCTTATGGGCATGATGAATAATTGTTGGTTCAGAGTCAAAACCAACGTGTGCAAGTCCCATAAAGGAGAGATTGGCATAGTGTTCGAGCACCCGACCCAACCAGGTAACCAATCTGGTGGTTGGATGGCCAAACAAAGACATGTAGAGAAGTCAGAGTCTAATCCAACCAATAAGAAGAATGTCTTGTCAATGTTCATGAAAAATTCTAGCTTAAAGAAGTATACAATGTCAGAAGTCAAAAAGCATAATAACATTGATTCAGCTTGGATGATCGTCCATGGCCACGTTTACGATTGTACCCACTATCTCAAAGATCACCCTGGTGGCATCGATAGCATCCTCATTAATGCCGGCACAGATTGTACAGAGGAGTTTGAAGCTATTCACTCTGACAAAGCCAAGAAAATGATCGAGGATTATCGAATCGGTGAGCTCATGACCACTGACTACACCTCTGATTCATTGCCAAATAACTCCAGGCATAACAATTTTGACACCATTCATTCAACCCTGGTCAATGTGGCTCTAATGAACCCACGTGAGAAGATTTCATGCAAGCTCTTGTCCAAAACGTGTATCTCCCAAGACGTTAGGATCTTCCGTTTTGCATTGCCTTCCAAGGACCAACTATTGGGTTTACCGGTAGGGAAGCACTTATTCTTATGTGCCACCATTAACGATAAGCTATGCATGCGAGCTTACACTCCATCAAGCACTGGGGACGAAGTGGGGTACTTCGATCTAGTGATCAAGATTTACTTCAAAGGGGTCCACCCAAAGTTCCCTATTGGTGGCCTTATGTCTCAACATTTAGACTCCCTACCTATTGGCTCAATCTTGGATGTGAAAGGTCCATTAGGCCACATAGAATACATTGGTAAAGGCAACTTTTTGGTTCATGGAAAACACAAGTTTGCCAAAAGGCTAGCCTTGTTGGCCGGTGGGACTGGGATCACACCTATTTACCAAGTGGCCCAAGCGATTCTCAAGGACCCAGAGGATCACACTGAAATGCATGTCATATACGCAAACCGGACTGAGGAGGATATATTGCTAAGGGAAGAGCTTGATGCATGGGCTAAGAAGCATGTACAATTCAAGGTGTGGTATGTAGTACAAGAAAGCGTAAAAGAAATGTGGGAATACAGTGTAGGGTTCATCACGGAAAGTATCATGAGGGAGCATGTTCCTCGGGCATCTCAAGATACATTAGCATTGGCCTGCGGACCACCACCTATGATTCAATTTGCAGTGCAACCAAATTTGGAGAAGTTGGGCTATGACATCAAGAACAACTTGCTTGTGTTTTAA 2652 0.4823 MAAAASVDKRLYNTSLQHDVVRSFESSQEVMRGMKKTLEPLFLSDSSSDEENGNNLKELIRKGNTEVEASIFDPRDEGTLDHWIQRSASLIRLTGKHPFNSEPPLSRLMHYGFITPVPLHYVRNHGPVPKARWEDWTVEVCGLVKRPARFTMDQLVHDFPSQEFPVTLVCSANRRKELNMVKQSIGFNWGPAATSTSVWRGVPLRTVLKRCGIYSRNSGAHYVCFEGADELPGGGGSNYGTSIVREVALDPSRDIILAYMQNGELLAPDHGFPLRVIIPGFTGGRMVKWLKRIVVTNHESDSYYHYHDNRALPSHVDAELANAEGWLYKAEYVINEMNINSVITTPCHDEILPINSWTTQRPYVLRGFAYSGGGRKVTRVEVTMDGGETWQVCRLEHPEKPNKYGKSWCWCFWCLEVEVLHLLGAKEIAVRAWDEALNTQPEKLNWNLMGMMNNCWFRVKTNVCKSHKGEIGIVFEHPTQPGNQSGGWMAKQRHVEKSESNPTNKKNVLSMFMKNSSLKKYTMSEVKKHNNIDSAWMIVHGHVYDCTHYLKDHPGGIDSILINAGTDCTEEFEAIHSDKAKKMIEDYRIGELMTTDYTSDSLPNNSRHNNFDTIHSTLVNVALMNPREKISCKLLSKTCISQDVRIFRFALPSKDQLLGLPVGKHLFLCATINDKLCMRAYTPSSTGDEVGYFDLVIKIYFKGVHPKFPIGGLMSQHLDSLPIGSILDVKGPLGHIEYIGKGNFLVHGKHKFAKRLALLAGGTGITPIYQVAQAILKDPEDHTEMHVIYANRTEEDILLREELDAWAKKHVQFKVWYVVQESVKEMWEYSVGFITESIMREHVPRASQDTLALACGPPPMIQFAVQPNLEKLGYDIKNNLLVF. 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02233 883 PIRSF Nitr_rd_NADH 5 882 IPR012137 GO:0006809|GO:0042128|GO:0050464
Seca4g02233 883 Pfam Mo-co oxidoreductase dimerisation domain 332 463 IPR005066 GO:0016491|GO:0030151
Seca4g02233 883 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 726 877 IPR039261 -
Seca4g02233 883 Gene3D - 336 511 - -
Seca4g02233 883 SUPERFAMILY Riboflavin synthase domain-like 621 740 IPR017938 -
Seca4g02233 883 PRINTS Cytochrome B5 signature 543 553 IPR001199 -
Seca4g02233 883 PRINTS Cytochrome B5 signature 580 592 IPR001199 -
Seca4g02233 883 PRINTS Cytochrome B5 signature 553 567 IPR001199 -
Seca4g02233 883 PRINTS Cytochrome B5 signature 568 575 IPR001199 -
Seca4g02233 883 Pfam Oxidoreductase NAD-binding domain 758 865 IPR001433 GO:0016491
Seca4g02233 883 Gene3D - 75 325 IPR036374 -
Seca4g02233 883 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 142 177 IPR022407 GO:0043546
Seca4g02233 883 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 73 333 IPR036374 -
Seca4g02233 883 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 549 556 IPR018506 GO:0020037
Seca4g02233 883 PRINTS Cytochrome B5 reductase signature 679 686 - -
Seca4g02233 883 PRINTS Cytochrome B5 reductase signature 795 806 - -
Seca4g02233 883 PRINTS Cytochrome B5 reductase signature 757 776 - -
Seca4g02233 883 PRINTS Cytochrome B5 reductase signature 851 859 - -
Seca4g02233 883 PRINTS Cytochrome B5 reductase signature 658 669 - -
Seca4g02233 883 PRINTS Cytochrome B5 reductase signature 724 738 - -
Seca4g02233 883 FunFam Nitrate reductase 336 511 - -
Seca4g02233 883 Gene3D - 734 883 IPR039261 -
Seca4g02233 883 Pfam Cytochrome b5-like Heme/Steroid binding domain 522 592 IPR001199 -
Seca4g02233 883 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 513 598 IPR036400 -
Seca4g02233 883 Pfam Oxidoreductase molybdopterin binding domain 125 304 IPR000572 -
Seca4g02233 883 SMART Cyt_b5_2 521 593 IPR001199 -
Seca4g02233 883 Gene3D - 513 594 IPR036400 -
Seca4g02233 883 Pfam Oxidoreductase FAD-binding domain 632 738 IPR008333 -
Seca4g02233 883 FunFam Nitrate reductase [NADH] 734 883 - -
Seca4g02233 883 FunFam Sulfite oxidase, mitochondrial 516 597 - -
Seca4g02233 883 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 627 739 IPR017927 GO:0016491
Seca4g02233 883 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 827 843 IPR001709 GO:0016491
Seca4g02233 883 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 679 686 IPR001709 GO:0016491
Seca4g02233 883 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 552 562 IPR001709 GO:0016491
Seca4g02233 883 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 757 776 IPR001709 GO:0016491
Seca4g02233 883 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 851 859 IPR001709 GO:0016491
Seca4g02233 883 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 795 806 IPR001709 GO:0016491
Seca4g02233 883 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 783 792 IPR001709 GO:0016491
Seca4g02233 883 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 518 593 IPR001199 -
Seca4g02233 883 SUPERFAMILY E set domains 336 463 IPR014756 -
Seca4g02233 883 CDD cyt_b5_reduct_like 632 883 - -
Seca4g02233 883 FunFam Nitrate reductase 77 326 - -
Seca4g02233 883 CDD eukary_NR_Moco 76 461 - -
Seca4g02233 883 Gene3D Translation factors 619 733 - -
Seca4g02233 883 FunFam NADH-cytochrome b5 reductase 617 733 - -
Seca4g02233 883 PANTHER SULFITE REDUCTASE 17 466 - -
Seca4g02233 883 PRINTS Eukaryotic molybdopterin domain signature 267 280 IPR008335 GO:0016491
Seca4g02233 883 PRINTS Eukaryotic molybdopterin domain signature 431 443 IPR008335 GO:0016491
Seca4g02233 883 PRINTS Eukaryotic molybdopterin domain signature 406 416 IPR008335 GO:0016491
Seca4g02233 883 PRINTS Eukaryotic molybdopterin domain signature 192 207 IPR008335 GO:0016491
Seca4g02233 883 PRINTS Eukaryotic molybdopterin domain signature 444 457 IPR008335 GO:0016491
Seca4g02233 883 PRINTS Eukaryotic molybdopterin domain signature 113 129 IPR008335 GO:0016491
Seca4g02233 883 PRINTS Eukaryotic molybdopterin domain signature 177 189 IPR008335 GO:0016491
Seca4g02233 883 PRINTS Eukaryotic molybdopterin domain signature 334 346 IPR008335 GO:0016491
Seca4g02233 883 PRINTS Eukaryotic molybdopterin domain signature 91 105 IPR008335 GO:0016491
Seca4g02233 883 PRINTS Eukaryotic molybdopterin domain signature 379 391 IPR008335 GO:0016491
Seca4g02233 883 PRINTS Eukaryotic molybdopterin domain signature 250 266 IPR008335 GO:0016491
Seca4g02233 883 PRINTS Eukaryotic molybdopterin domain signature 166 177 IPR008335 GO:0016491
Seca4g02233 883 PRINTS Eukaryotic molybdopterin domain signature 283 296 IPR008335 GO:0016491
Seca4g02233 883 PRINTS Eukaryotic molybdopterin domain signature 365 379 IPR008335 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02233 Seca-Chr4 38002680 38007128 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02233 624 874 NADPH P450 reductases AT5G17770 39.370 5.52e-48 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02233 K10534 - gmx:732634 1436.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02233 4 38002680 38007128 Seca4g02233 4 38002680 38007128 ECH