Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02220 ATGGATTCCAAGAAGCTACGAAGAAAACCCAAGCTCGAGCGCCGTAATGCCCTCAAGTACTTTGAGTACGATGCTGGATCGTCTTCCTCTTCTCTCGATATCTACGACCGCACCAGCTTCCGTATTGAGGGAATCGAAGGCGAGTTCGATCGAATTTGCAGGAGTTTGGGGCTGTCGGGGCCAGAAGACTTTGCTATTCCCGCCGCCGCATGGGAGGCCATGAAGGTTCGATCCTCTTCTGATATTCTTCCGAGGTTGAAGCGCAATGAGATGAATCTTCCGGAGAAGGAAGAGCCCGAGGCAAACGAGGAGAGCAACGTAGCAGAGAAAGATGAATTGAGCGAAGATGAGGAATCGTGTTCGTTTACTACATCGAATGAAGATGATTCTTCTAGCACTGCCACGGACCCAAGGTCCAATAATGTATCTCCTAATGGGAGAATAAAACGTGTTATTACCCCTAGCAGCTGGCAAAAGGGTGAGTTTTTGGGGGGTGGCTCCTTTGGGTCCGTCTATGAAGGAATTTCTGACGATGGATTCTTTTTTGCGGTAAAAGAAGTTTCACTGCTTGATCAAGGGAGTCAGGGAAAACAAAGTGTCTATCAACTGGAGCAGGAAATTGCACTTTTGAGCCAATTTGAACATGAAAATATAGTTCAATACTATGGCACTCAAATGGATGAATCAAAGCTGTATATCTTTATTGAGCTTGTAACCAAAGGTTCCCTTAGAAACCTCTATCAGAAGTATACTCTTCGAGATTCCCAAGTATCTGCCTATACAAGACAGATTCTGCATGGTTTGAAGTATCTTCATGACCAAAATGTGATTCACAGTGAGCTTCATGAGGAGATTTATATGGAGCAACCGCCTGGCTTTGTTGCTCTGGGGGAGTCTAATCTAGTTTGTAAACTTCGTCGCTCCCTTTATGGTTTAAAGCAATCTCCCCGTGCTTGGTTTGGAAGATTTAGCACTGTCATTCAAGACTTTGGTATGTCTCGATGTGATTCTGATCATACAGTCTTTTATAGACATAATCCTCAGGAAAAATGTATTTATTTGGTTGTCTATGTTGATGACATTGTCATAACTGGAGATGATCAAGGTGGCATTGAAAAGCTGAAACAACACTTATTCCATCACTTTCAGACCAAGGACTTGGGCTTGCTTAAATACTTTTTGGGTATTGAAGTAGCTCAATCTAAGGAGCCATTGACTGATCCAGGCAAGTATCGGAGACTAGTTGGCAAGCTAAATTATCTCACTATCACCCGTCCAGATATTTCCTTTCCTGTTTCAGTGGCGAGTCAGTTTCTTCAGTCTCCCTGCGATAGTCATTGGGATGCAGCTGTTCGTGTTTTGAGGTATGTCAAAGATGCTGATTGGGCTGGATCCCCTTCTGATAGGCGTTCTACCTCAGGATACTGTGTTCTTGTGGGAGGTAATCTTGTTTCTTGGAAGAGTAAAAAGCAAGAGGTGGTAGCTAGATCTAGTGCTGAGGCTGAGTATCGTGCCATGGCCTTAGTCACTTGTGAACTCATCTGGATCAAGCAACTAATCCATGAATTGAAATTTACAGAGGTCTCACAAATGAAGTTGCTTTGTGATAATCAGGCTGCTCTTCATATTGCTTCCAATCCGGTGTTTCATGAGAGGACTAAACACATTGAAGTGGATTGTCATTTTATTAGAGAAAAGGTTCTCTCTGGATGTATTGTCACTAGTTACACTAGTTCTAATGAACAACTAGCTGACGCAACCAAATTGAATGATGTTAAATCATGCAAGGGGACAGCATTTTGGATGGCCCCTGAGAACCAAGGTTACGGGCTTCCAGCTGATATGTGGAGTCTGGGATGCACTGTGCTTGAGATGCTCACAGGCCAAATTCCATACTCTGATTTTGAATGTATGCAGGCCCTATTTAGAATTGGAAAGGGTGAGCGACCTCCTATTCCTGACTCTCTTTCAAGAGATGCAAGGGATTTTATCCTGCAGTGCCTTCAAGTTAATCCGGGTGATCGTCCCACTGCTGGTCAACTCTTAAACCATCCATTTGTCCAAAGGCCAGTTTCCCAGTCCTCTGGTTCCTCATTTCCTTACATTCGTGGCAGAAAGAGTTAA 2124 0.4379 MDSKKLRRKPKLERRNALKYFEYDAGSSSSSLDIYDRTSFRIEGIEGEFDRICRSLGLSGPEDFAIPAAAWEAMKVRSSSDILPRLKRNEMNLPEKEEPEANEESNVAEKDELSEDEESCSFTTSNEDDSSSTATDPRSNNVSPNGRIKRVITPSSWQKGEFLGGGSFGSVYEGISDDGFFFAVKEVSLLDQGSQGKQSVYQLEQEIALLSQFEHENIVQYYGTQMDESKLYIFIELVTKGSLRNLYQKYTLRDSQVSAYTRQILHGLKYLHDQNVIHSELHEEIYMEQPPGFVALGESNLVCKLRRSLYGLKQSPRAWFGRFSTVIQDFGMSRCDSDHTVFYRHNPQEKCIYLVVYVDDIVITGDDQGGIEKLKQHLFHHFQTKDLGLLKYFLGIEVAQSKEPLTDPGKYRRLVGKLNYLTITRPDISFPVSVASQFLQSPCDSHWDAAVRVLRYVKDADWAGSPSDRRSTSGYCVLVGGNLVSWKSKKQEVVARSSAEAEYRAMALVTCELIWIKQLIHELKFTEVSQMKLLCDNQAALHIASNPVFHERTKHIEVDCHFIREKVLSGCIVTSYTSSNEQLADATKLNDVKSCKGTAFWMAPENQGYGLPADMWSLGCTVLEMLTGQIPYSDFECMQALFRIGKGERPPIPDSLSRDARDFILQCLQVNPGDRPTAGQLLNHPFVQRPVSQSSGSSFPYIRGRKS. 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02220 707 CDD RNase_HI_RT_Ty1 459 588 - -
Seca4g02220 707 Gene3D Transferase(Phosphotransferase) domain 1 239 355 - -
Seca4g02220 707 Gene3D Phosphorylase Kinase; domain 1 141 238 - -
Seca4g02220 707 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 89 695 - -
Seca4g02220 707 MobiDBLite consensus disorder prediction 87 108 - -
Seca4g02220 707 Pfam Protein kinase domain 158 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02220 707 Pfam Protein kinase domain 590 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02220 707 MobiDBLite consensus disorder prediction 124 150 - -
Seca4g02220 707 ProSitePatterns Protein kinases ATP-binding region signature. 163 185 IPR017441 GO:0005524
Seca4g02220 707 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 273 402 IPR013103 -
Seca4g02220 707 SUPERFAMILY Protein kinase-like (PK-like) 146 691 IPR011009 -
Seca4g02220 707 MobiDBLite consensus disorder prediction 109 123 - -
Seca4g02220 707 Gene3D Transferase(Phosphotransferase) domain 1 566 698 - -
Seca4g02220 707 ProSiteProfiles Protein kinase domain profile. 157 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g02220 707 MobiDBLite consensus disorder prediction 87 150 - -
Seca4g02220 707 FunFam Mitogen-activated protein kinase kinase kinase 19 587 699 - -
Seca4g02220 707 SUPERFAMILY DNA/RNA polymerases 297 561 IPR043502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02220 Seca-Chr4 37570027 37589432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02220 257 582 Receptor kinase-like Gene Family AT4G23160 38.677 5.10e-77 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca4g02220 RVT_2 1.4e-33 CL0027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02220 - - vvi:132254311 492.656