Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02207 ATGGGTTCACTTGACTGTTGTTCATTGCGTGGTGATGAGATGGCGGTTTTGTCTCTGAATTCACTGCCTTTAGGGTTCCGATTCCGACCTACAGATGAGGAACTCATCGATTACTACCTGCGACAGAAGATCAATGGCAATGGTGAAGAAGTTTGGGTTATCAGAGAAATTGATGTCTGCAAGTGGGAACCCTGGGATTTGCCTGATTTGTCAGTGATAAGGAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCACAGGACCGTAAGTATCCAAATGGGCATAGATTGAACAGAGCAACAAATCATGGGTATTGGAAGGCAACAGGCAAGGATCGTAAAATCAAGTCTGGGTCTATCTTGATTGGAATGAAGAAGACTTTAGTCTTCTATAATGGTCGTGCACCAAAAGGGAAGAGGACTAATTGGGTTATGCATGAGTATAGGCCTACCCTGAAGGAGCTTGATGGTACCAATCCTGGACAGAATGCGTATGTCCTGTGTCGATTATTTAAGAAACAAAATGAGAGCCTTGAAGCTTCAAACTGTGATGAAGTAGAACAGACTACTTCAATTCCTATGGCTGCCAATTACTCTCCAGAAGAAATACAATCTGATTCAGCTCTTATTGCAGTGTCCCCATCACAGGTTACAGAAGATGATAAGCATCAAGCAATTATCCCCGAGATCTCTGAAGAAACAATATCCAACATAGTAACCCCGGTTGATTGCTATAGTGACAGATATGATGCTCAAAATCAAATTGTAAAACCACCTGCGGAGGAGGATCAGCCGTTGAACTTTGACATATTTGATGACCCAAGTTACAATCTCTTAGATGACAAATTATTTTCCCCAGTACTTGTGCATATTCCACAAGAATTTCATTATCAAGCAAACAATGAATCAGATGGTCGATGTGCACTTCAATATGGTACAAATGAACCAAATATTTCAGACCTTTTTAATTGGGAGCAACTCTCCTATGAGGAGCCCGGTTGTCAACAGCAGAACTTCCCCTTGTTTAATGTTAAGGATAGTGGATCGGGCAGTGACTCAGATGTGGAAGTAGCCAATATGACTATGCTGCAGTGTATGCAAGCTGCTTATTCTGAGGCAATTGACAGAAGAATTCCTTTGGTGACAACACCAGAATTTTGCAGCACCATTGGAATCCCCTTTAACCATAGTGGTGATGAGCAGAAGATCAATGTTGGGTTATTTCAAAATAATGCCCAGATGGCCTTTTCATCTGATGTCAGTATGGGCCAAGTGTACAATGTGGTCAATGATTATGAGCAACCAAGAAACTATAATATAGCTGCTGGTGATGAAATTGGAATCATAAGAAGGCCTCGACCGGCACAAAATGAACATCTGAACACAAACTCAACGCAAGGTATTGCAAACAGGAGAATTCGTTTGTTAAAGAGAGCACATGGTTCAAATAAGATGGGGAAAGATCGGAGTTGTGCACAAGAAAAGCATAATTCAAAACCAGTCATTGCAGTGGACAAGAAAGCTTCAGAACATCATGTTGCAGATGAAAGTGCTAGTCTTACTAATTATGTGAATGAACTGCAGAAGACACCTGAGTCAACCAACAATAGAAAGATTTCTCAACAAGTTGCAAATGCAGGTTTCACCTTGGTGTTAAAAGATATTTTATTGCTCAGAAGGGTGCCTTACATATCAAAGGCTTCCTCCAATCTTACCATGTGGTCTTATGTTTTTGTAGTTTCTGCCTTTGTACTGCTCTTATTAGTGGTCTATACTAACATAATATGGGGTATCTTAAATTTTGAAGTTCTAGGAAATCATTCCTTTTTTTTTATTATTTGTATTTGCCTCCATTTCTTTTTTGGGCCAATTGAGGGGAGGCATAGGGTTGACTTTCTTAGATTTGTTCATAACTCTGTGTGTGTGTGTAGTTGGTGTATAATATGTATCCTCACCTGGTTGGCTAGTCTGTAG 1971 0.4039 MGSLDCCSLRGDEMAVLSLNSLPLGFRFRPTDEELIDYYLRQKINGNGEEVWVIREIDVCKWEPWDLPDLSVIRNKDPEWFFFCPQDRKYPNGHRLNRATNHGYWKATGKDRKIKSGSILIGMKKTLVFYNGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNAYVLCRLFKKQNESLEASNCDEVEQTTSIPMAANYSPEEIQSDSALIAVSPSQVTEDDKHQAIIPEISEETISNIVTPVDCYSDRYDAQNQIVKPPAEEDQPLNFDIFDDPSYNLLDDKLFSPVLVHIPQEFHYQANNESDGRCALQYGTNEPNISDLFNWEQLSYEEPGCQQQNFPLFNVKDSGSGSDSDVEVANMTMLQCMQAAYSEAIDRRIPLVTTPEFCSTIGIPFNHSGDEQKINVGLFQNNAQMAFSSDVSMGQVYNVVNDYEQPRNYNIAAGDEIGIIRRPRPAQNEHLNTNSTQGIANRRIRLLKRAHGSNKMGKDRSCAQEKHNSKPVIAVDKKASEHHVADESASLTNYVNELQKTPESTNNRKISQQVANAGFTLVLKDILLLRRVPYISKASSNLTMWSYVFVVSAFVLLLLVVYTNIIWGILNFEVLGNHSFFFIICICLHFFFGPIEGRHRVDFLRFVHNSVCVCSWCIICILTWLASL. 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02207 656 Gene3D NAC domain 31 177 IPR036093 GO:0003677|GO:0006355
Seca4g02207 656 ProSiteProfiles NAC domain profile. 22 172 IPR003441 GO:0003677|GO:0006355
Seca4g02207 656 SUPERFAMILY NAC domain 14 172 IPR036093 GO:0003677|GO:0006355
Seca4g02207 656 FunFam Nac domain-containing protein 86 31 175 - -
Seca4g02207 656 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 21 231 - -
Seca4g02207 656 Pfam No apical meristem (NAM) protein 23 148 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02207 Seca-Chr4 37360548 37364828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02207 14 214 NAC Transcription Factor Family AT4G35580 67.164 1.82e-91 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca4g02207 NAM 6.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02207 - - gmx:100777071 829.706