Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02203 ATGAAGACAATCCTTTCTTCAGAGACTATGAACATCCCTGACGGCGTTAGCATCAAGGTTAACGCCAAGGTCATCGAGGTTGAAGGCCCTCGCGGTAAGCTTGTCCGTGACTTCAAGCATCTCAACCTCGATTTCGAGCTCATCACCGATGAAAACGGCAAGAAGAAGCTTAAGATCGAATCCTGGTTCGGCTCCCGCAAGACCTCCGCCGCCATTCGCACCGCCCTCAGCCACGTCGAGAATCTCATCACCGGCGTCACCAAGGGCTACCGCTACAAGATGAGGTTCGTCTACGCTCACTTCCCCATCAATGCTAGCATTACCAACGACAACAGGTCCATCGAGATCCGAAACTTCCTTGGCGAAAAGAAGGTGAGAAAAGTGGACATGCTTCAAGGCGTTACCGTTCTTCGATCTGAGAAAGTTAAGGATGAATTGGTTTTGGATGGAAATGACATTGAGCTTGTTTCTCGGTCTTGTGCCCTTATTAACCAGAAATGCCATGTTAAAAATAAGGATATTAGGAAGTTTCTTGATGGTATTTATGTTAGCGAGAAGGGAACAATACTTGAAGAGTAG 579 0.4732 MKTILSSETMNIPDGVSIKVNAKVIEVEGPRGKLVRDFKHLNLDFELITDENGKKKLKIESWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNDNRSIEIRNFLGEKKVRKVDMLQGVTVLRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLDGIYVSEKGTILEE. 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02203 192 FunFam 60S ribosomal protein L9 1 89 - -
Seca4g02203 192 FunFam 60S ribosomal protein L9 90 192 - -
Seca4g02203 192 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 190 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Seca4g02203 192 Gene3D - 90 192 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Seca4g02203 192 Gene3D - 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Seca4g02203 192 SUPERFAMILY Ribosomal protein L6 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Seca4g02203 192 ProSitePatterns Ribosomal protein L6 signature 2. 165 186 IPR002359 GO:0003735|GO:0005840|GO:0006412
Seca4g02203 192 Pfam Ribosomal protein L6 101 180 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Seca4g02203 192 Pfam Ribosomal protein L6 12 89 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Seca4g02203 192 SUPERFAMILY Ribosomal protein L6 90 186 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Seca4g02203 192 PIRSF RPL6p_RPL6a_RPL9e_RPL9o 1 189 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02203 Seca-Chr4 37281162 37282533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02203 1 192 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 85.492 8.32e-121 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02203 K02940 - gmx:100500079 360.918