Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02185 ATGGCTCCCAGCAGACCCCAAAAGGTAGTGCAAATGGCAGAAGAAGAAGATGGGCATGATGATGAGCCCAAGAAAAACGTGGTCAGAACATTGCCATTCTTTAAACTGTTGAGCTATGCTGACTTAGTGGATTGGATTCTGATGGGTTTGGGAGTTGTAGGCTCCATTGTGCATGGTATGGCACTTCCTGTTGGGTACCTGTTGTTAGGGAAAGCTCTTAATGCTTTTGGGGACAATATTAATGACCAAGATGCCATGGTCGATGCTCTTAAACAAGTTGTTCCATTTGTGTGGTACATGGCCATAGCCACATTTCCTGCTGGGGTACTTGAAATTGGTTGTTGGATGTATACAAGTGAAAGACAGTTATCACGCCTAAGATTAGCATATCTAAGAGCAGTCCTGAGCCAAGAGATAGGGGCTTTTGATACAGAACTAACAGGTGGAAAAGTCATCACTGGAATAAGCAAGCACATGAGTGTCATACAAGATGCCATTGGTGAGAAGCTGGGTCACTTCACCTCTAGCTGTGCAACTTTCTTTGCTGGAATTGTGATTGCTACCATATGTTGTTGGGAAGTGGCACTTCTGTGTTTAGTGGTTGTCCCGCTTATTCTTATAATTGGGGCAACATACACCAAGAAAATGAACACCATATCAACCACCAAATTGATTTACCATTCTGAAGCTACATCTATGATAGAACAGACAATAGCACATATTAAAACAGTATATGCTTTTGTTGGAGAGAGCACTGCCATCAAATCCTTCACAGAGAACATGGATAAACAGTACATTATAAGCAAAGGGGAGGCACTTGTGAAGGGAGTTGGAACAGGGATGTTTCAAACTGTGAGTTTCTGTTCTTGGGCTCTCATCATATGGGTTGGAGCAGTTGTGGTCAGAGCCGGGAGGGCAAAGGGAGGAGACATAATAGCTGCAGTGATGAGTATTCTTTTTGGTGCTATATCTCTCACATATGCAGCACCAGACATGCAAATATTCAATCAGGCAAAGGCTGCAGGATATGAGGTTTTCCAAATGATCCAAAGAAAGCCACTAATAAAAAATGAACCAAAAGGGAAGATGCCTAGGAAAATTAAAGGTGACATTGAGCTACGAGATGTCTACTTTTCCTACCCATCAAGGCCAGAGAAACCTATCCTTCAAGGACTGTCCTTGTCAATTCCAGCTGGAAAGACAGTAGCACTAGTTGGTACCAGCGGGTGTGGAAAGAGCACTGTTATTTCCCTGGTTACCAGATTTTATGACCCCCTGAGAGGAGAAATTTTTATTGATGGTCACAAAATCAAGGATCTAGATCTGAAGTTTCTGCGAAGAAATATAGGGGTTGTTTCCCAAGAACCATCACTCTTTGCAGGCACCATCAAGGATAACTTGAAGCTGGGAAAAATGGATGCAAATGACGAAGAGATACAGAAGGCAACAGTAATGTCAAATGCACACACTTTCATATCACAGCTTCCTAATCAGTACCTAACAGAGGTAGGACAAAGGGGAGTCCAATTATCAGGAGGTCAGAAACAGAGAATTGCAATAGCAAGAGCCATTCTGAAAAATCCTCCCATCCTTTTGCTTGATGAGGCCACTAGTGCCCTTGATACAGAGTCAGAAAAGCTGGTTCAAGAAGCACTTGAGACAGCTATGCAGGGAAGGACTGTCATCTTGATTGCACATAGGCTCTCAACGGTTGTAAATGCAGACATGATTGCTGTAGTGGAAAATGGACAAGTTGTAGAGACAGGAACACACCAGAGTTTGTTAAACACAAGCAAATTCTATAGTACGTTATTCAGCATGCAGAACCTTGAAAAACCAGTTCCAGAATCCAGAACTACAATTTCCAAAAATAAAAGTGCCCGCCAAGAAGATATTATTCCTGATGAAATTAGACCACCACAAGAGACCCAGAAAGAGGTCCAAAGAACTCTCCCTGAGCATTCTGTACTAAAGGAACAGAACAAGACAAGCACAAGAGAAAGAAGTATATTTTTCAGAATTTGGTTTGATTTAAAAAAGGAGCTGGTGAAGATTGCTATTGGCTCGTTTGCAGCAGCTTTCTCTGGCATCTCAAAGCCATTTTTTGGGTTCTACATCATCACCATTGGAGTAGCATACTTTCATGAAGATGCAAAGCGGAAAGTTGGATATTTTTCAGCCATTTTCTCTGCAATAGGGTTGCTTTCATTATTTAGCCACACCTTCCAGCATTACTTCTTTGGAATGGTTGGAGAAAAGGCCATGGCAAATCTCAGATGTGCTCTGTATTCAGGTGTGCTTCGGAATGAAGTAGGCTGGTTTGACAAATCTGAGAACACTGTTGGCTCATTAACTTCACGCATTATCAGTGATACTTCCATGGTCAAAATCATAATTGCTGATCGCATGTCCGTGATTGTGCAATGTGTTTCCTCCATACTGATAGCAACAGTTGTCAGCATGATTGTCAACTGGAGAATGAGTTTGGTAGCTTGGGCTGTGATGCCCTGCCACTTTATAGGTGGTCTCATTCAAGCCAAGTCTGCCAAAGGGTTTTCAGGTGACTACTCCACTGCACATTCTGAGCTTGTTGCTCTTGCATCGGAGTCTGCAACCAACATAAGGACTATTGCGTCATTTTGTCATGAAGAGGAAGTACTGAAGAAAGTCAAAACATCTCTGGAATTTCCAATGAAAAAGTACAGGAATGAAAGTATCAAATATGGTATCATTCAAGGTTTCTCCCTTTGCTTGTGGAACATTGCACATGCTGTTGCTTTGTGGTACACAACAATTCTGGTTGACAGACGTCAAGCCTCCTTTGAAAATGGAATAAGATCATACCAAATTTTTTCTCTCACAGTGCCTTCTATCACGGAATTATACACGCTGATCCCAACTGTCATCTCTGCTATCAATATACTCACCCCAGCATTCAAAACCCTTGACCGTAAAACTGAAATTGAACCAGATAAACCAGATGATTCCCAGCCTGAGAGGATCCAAGGAAATGTTGAATTTGATCATGTAATATTCAACTACCCTTCAAGACCTGCAGTCACTGTTCTTGACAATTTCAGTTTACAAATTGAAGCTGGATCGAAAGTGGCTTTTGTAGGACCAAGCGGCGCTGGAAAATCCTCTGTTTTGGCCCTTATACTAAGATTTTACGATCCAGGTGCAGGAAAGGTATTAATTGACGGGAAAGACATACGGGAATATAATCTAAGATGGTTAAGGACACAAATAGGGCTGGTACAGCAAGAGCCACTGCTTTTTAACTGCTCGATTAGCGACAATATTTGCTATGGCAATAATGGGGCTTCTGAAAGTGAAATAGTGGAGGTTGCCAGGGAAGCAAACATACATGAATTTGTGAGTAATCTGCCAAATGGATATAACACTGTTGTAGGAGAGAAAGGCTGCCAGCTTTCAGGAGGGCAGAAGCAAAGAATAGCCATTGCCAGAACATTACTAAAGAAGCCTGCAATACTGCTCCTTGACGAAGCAACAAGTGCTCTTGATGCTGAGTCTGAAAGAATTATAGTAAATGCTTTAAAAGCAATGAACCTGAAAGAAGACAGTGGCTTGTGTTCAAGAACCACCCAGATCTCAGTAGCTCATAGACTTTCCACAGTAATAAACTCAGATACCATAATTGTCATGGATAAAGGTAAAATTGTAGAGATGGGCTCCCACTCAACCTTAATAGCAGAAGATGCGGGGCTTTATTCTAAGTTATTCAGGTTACAGAGCTTTGAAGAAGCTTCATAG 3774 0.4184 MAPSRPQKVVQMAEEEDGHDDEPKKNVVRTLPFFKLLSYADLVDWILMGLGVVGSIVHGMALPVGYLLLGKALNAFGDNINDQDAMVDALKQVVPFVWYMAIATFPAGVLEIGCWMYTSERQLSRLRLAYLRAVLSQEIGAFDTELTGGKVITGISKHMSVIQDAIGEKLGHFTSSCATFFAGIVIATICCWEVALLCLVVVPLILIIGATYTKKMNTISTTKLIYHSEATSMIEQTIAHIKTVYAFVGESTAIKSFTENMDKQYIISKGEALVKGVGTGMFQTVSFCSWALIIWVGAVVVRAGRAKGGDIIAAVMSILFGAISLTYAAPDMQIFNQAKAAGYEVFQMIQRKPLIKNEPKGKMPRKIKGDIELRDVYFSYPSRPEKPILQGLSLSIPAGKTVALVGTSGCGKSTVISLVTRFYDPLRGEIFIDGHKIKDLDLKFLRRNIGVVSQEPSLFAGTIKDNLKLGKMDANDEEIQKATVMSNAHTFISQLPNQYLTEVGQRGVQLSGGQKQRIAIARAILKNPPILLLDEATSALDTESEKLVQEALETAMQGRTVILIAHRLSTVVNADMIAVVENGQVVETGTHQSLLNTSKFYSTLFSMQNLEKPVPESRTTISKNKSARQEDIIPDEIRPPQETQKEVQRTLPEHSVLKEQNKTSTRERSIFFRIWFDLKKELVKIAIGSFAAAFSGISKPFFGFYIITIGVAYFHEDAKRKVGYFSAIFSAIGLLSLFSHTFQHYFFGMVGEKAMANLRCALYSGVLRNEVGWFDKSENTVGSLTSRIISDTSMVKIIIADRMSVIVQCVSSILIATVVSMIVNWRMSLVAWAVMPCHFIGGLIQAKSAKGFSGDYSTAHSELVALASESATNIRTIASFCHEEEVLKKVKTSLEFPMKKYRNESIKYGIIQGFSLCLWNIAHAVALWYTTILVDRRQASFENGIRSYQIFSLTVPSITELYTLIPTVISAINILTPAFKTLDRKTEIEPDKPDDSQPERIQGNVEFDHVIFNYPSRPAVTVLDNFSLQIEAGSKVAFVGPSGAGKSSVLALILRFYDPGAGKVLIDGKDIREYNLRWLRTQIGLVQQEPLLFNCSISDNICYGNNGASESEIVEVAREANIHEFVSNLPNGYNTVVGEKGCQLSGGQKQRIAIARTLLKKPAILLLDEATSALDAESERIIVNALKAMNLKEDSGLCSRTTQISVAHRLSTVINSDTIIVMDKGKIVEMGSHSTLIAEDAGLYSKLFRLQSFEEAS. 1258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02185 1257 MobiDBLite consensus disorder prediction 615 660 - -
Seca4g02185 1257 SUPERFAMILY ABC transporter transmembrane region 35 358 IPR036640 GO:0005524|GO:0016020
Seca4g02185 1257 Pfam ABC transporter 1023 1172 IPR003439 GO:0005524
Seca4g02185 1257 CDD ABC_6TM_Pgp_ABCB1_D1_like 48 345 - -
Seca4g02185 1257 ProSitePatterns ABC transporters family signature. 1144 1158 IPR017871 GO:0005524|GO:0016887
Seca4g02185 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 608 IPR027417 -
Seca4g02185 1257 Gene3D - 995 1256 IPR027417 -
Seca4g02185 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 997 1251 IPR027417 -
Seca4g02185 1257 MobiDBLite consensus disorder prediction 623 660 - -
Seca4g02185 1257 MobiDBLite consensus disorder prediction 1 23 - -
Seca4g02185 1257 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 686 970 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g02185 1257 FunFam ABC transporter B family member 4 361 616 - -
Seca4g02185 1257 Gene3D ABC transporter type 1, transmembrane domain 647 993 IPR036640 GO:0005524|GO:0016020
Seca4g02185 1257 PANTHER ABC TRANSPORTER B FAMILY 9 738 IPR039421 -
Seca4g02185 1257 Pfam ABC transporter transmembrane region 49 322 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g02185 1257 Pfam ABC transporter transmembrane region 687 949 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g02185 1257 SUPERFAMILY ABC transporter transmembrane region 671 991 IPR036640 GO:0005524|GO:0016020
Seca4g02185 1257 CDD ABC_MTABC3_MDL1_MDL2 1005 1251 - -
Seca4g02185 1257 FunFam ABC transporter B family member 1 995 1252 - -
Seca4g02185 1257 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 371 607 IPR003439 GO:0005524
Seca4g02185 1257 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1005 1249 IPR003439 GO:0005524
Seca4g02185 1257 SMART AAA_5 1032 1226 IPR003593 GO:0016887
Seca4g02185 1257 SMART AAA_5 398 590 IPR003593 GO:0016887
Seca4g02185 1257 Pfam ABC transporter 389 538 IPR003439 GO:0005524
Seca4g02185 1257 CDD ABC_6TM_Pgp_ABCB1_D2_like 679 988 - -
Seca4g02185 1257 Gene3D ABC transporter type 1, transmembrane domain 35 623 IPR036640 GO:0005524|GO:0016020
Seca4g02185 1257 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 50 337 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca4g02185 1257 ProSitePatterns ABC transporters family signature. 510 524 IPR017871 GO:0005524|GO:0016887
Seca4g02185 1257 Gene3D - 361 609 IPR027417 -
Seca4g02185 1257 CDD ABC_MTABC3_MDL1_MDL2 371 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02185 Seca-Chr4 37032192 37040136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02185 21 1253 Calmodulin-binding Proteins AT2G36910 41.237 0.0 963
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02185 K05658 - zju:107414909 1815.43