Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02182 ATGGAGACTCTGAAAGCTGCGATTCCTGAAGGCCTGAAGCGAGTGATTGGGGAGAGCACAGTCGATGATCTTCGAAGCACGTGTTCTTCTCTTCACCGCTTCTTTCTTCATTTCGAGCCATTTCACCAGATGGTGACTGAATTGGCTGACCCAAAGTATGCTCTGTGCGGCAAGAATAAGGACGCTGCATTAAAATCCAAGCAGCTTGGCAATCACTGCTTCTCGAACGCAGATTACGCGAAGGCTTTGGATTGCTATACTCAGGCATTGCGCAAGGCTCCTTTCGAGGCTGGTCACACGGAAAATAATCTCACTGTGTTGTTGTATATTAATCGAGCTACTGTATTGCATAAAATGAGTCTTTTAATAGAATGTCTACGAGATTGCGATCGTGCTCTTCAGATATGTCCAAGCTATGCCAAGGCATGGTATAGGAGAGGTAAGGCCAATGCTTCACTGGGAAATTATAAAGATGCCATTTGTGACCTAAATGTGGCTAAGATTGCGGAATCATCAATGGGTGGGAAGAGACAAATAGAAAGTGAGCTGAAAATTATTTTAGACCAACGCAACAAAAGTACAGTAGTACAGCTACAACATAAGGAGAACAGCTTGAATACAGTGGGTGAGATGCCCCAAATAAAGCTACAGTGTGTCTCAATGCCTGATAAAGGAAGAGGCATGGTGTCGTCATGTGATATTTCACCTGGTTCTTTGGTTCATGTTGAAGAGCCTTATGCTACGATAATATTAAAGCAATGCCGGGAAACTCATTGTCATTATTGCTTGAATGACCTACCTGCTGATAGAGTTCCTTGTACATCATGTTCAATACCATTGTACTGCTCACACCAATGCCAGATACGGGCAGGTGGGCAAATGTTCAGAATTGGCCCAGGTGCTAATGGCATTCTTAAAAACTTACCCAGCGATCTTGGAGAATATGCTGCTAAAGTTATTCAATACAATGATTCTGAACAAGAGATTGAGGATATTACTGAACATAAACACGAATGTCATGGTGTACATTGGCCTGCTGTATTGCCGTCTGAGATTGTTTTGGCTGGCCGGATACTAGCAAGGTTTTTGTCAAAGAGCAGACCTGAAGATATTACAAACATTGTAGAAAAACTGGGGTTTTCTCAGTCTTACAAACATATGCCATCTGAAAGCAAATTGGATTCACATATATATGCCATTGTGTTATTATATTGTCTTCAACACTCTTATGGGAATGGGACCATGTTTTCCATAGATGGAATCTCTATGTCACAGGTTGTCATAATTATTTCCCAAATTAAAGTGAATTGTATGACTGTTGTTCGATTGAAATCAATAGATGCTCATGGACTATCAGATCAGTCTGGAGAATTTGCATTTCGGTCCAGTGTACATTTAACTAATAATGTGGAACAGGTCAGAGTGGGTAAAGCTATTTATAGAGCTGGCAGTTTATACAACCATTCTTGCCAACCAAATGTTCATGCATACTTTCTCTCACGCACTCTTTATTTACGAACCACAAAAGTTGTAGCTGCTGGACATGAACTGGAGTTGTCTTATGGTCCACAGGTTGGGTTGTGGGATTATAAAGATCGTTGTAATTTTCTTAAAGATGAATACGCGTTCCATTGTCAGTGTAGCGGTTGTTCAGAAGTCAATCTATCTGACATTGTCCTCAATGCTTTTCATTGTGTCAATCCAAATTGTTCTGGTGCAGTGTTGGAAAGCAGAGTACTTGACAGTGAAAAGCAGAAAACCAAAAACTTCCCTATTGTTGACAAAGTTGACAAGAATGGTGACATTTATGAAATAGGTCTTCATGCATTCAACCAAAATGATGCCTCTATTCATATTCAACCTGGATGCTGTTTGAAATGTGGTTCTTACTGTGATTTGGATTCTTCACGTGCTGCAGTAAATAAAGCCTTAATATGCATAAAAAGGTTGCAGGATGCAATACTGTCAAGAGAAATTTCAAATACTTCTATTTCCAATGCTTTGAGATCTCTACATTTGCTGAGATCAAATTTACATGCATACAACAAGCTTATTGCAGAGGCAGAAGATAACCTTGCCCAGGCTTTTTGTTTAGTGGGAGAATTACAATTATCTGTCGATCGTTGTAAAGCATCTATCCAGGTAAAACTTATATTGATAAGCATACTATCTTACAGGTTGGCTTGTTTCTGCCACTCAGCAAAAGCAAAAACAAACACATGGGGAGAAGTTTGTTTCTTACATATTTTTTATTTGCTAGTATCTCTTTGTGTGTATCTCGGACTTATAAGTTGTCAAATGCCTTTTTCCAGTGGTAGAAATATAAATAATTGTTAG 2337 0.395 METLKAAIPEGLKRVIGESTVDDLRSTCSSLHRFFLHFEPFHQMVTELADPKYALCGKNKDAALKSKQLGNHCFSNADYAKALDCYTQALRKAPFEAGHTENNLTVLLYINRATVLHKMSLLIECLRDCDRALQICPSYAKAWYRRGKANASLGNYKDAICDLNVAKIAESSMGGKRQIESELKIILDQRNKSTVVQLQHKENSLNTVGEMPQIKLQCVSMPDKGRGMVSSCDISPGSLVHVEEPYATIILKQCRETHCHYCLNDLPADRVPCTSCSIPLYCSHQCQIRAGGQMFRIGPGANGILKNLPSDLGEYAAKVIQYNDSEQEIEDITEHKHECHGVHWPAVLPSEIVLAGRILARFLSKSRPEDITNIVEKLGFSQSYKHMPSESKLDSHIYAIVLLYCLQHSYGNGTMFSIDGISMSQVVIIISQIKVNCMTVVRLKSIDAHGLSDQSGEFAFRSSVHLTNNVEQVRVGKAIYRAGSLYNHSCQPNVHAYFLSRTLYLRTTKVVAAGHELELSYGPQVGLWDYKDRCNFLKDEYAFHCQCSGCSEVNLSDIVLNAFHCVNPNCSGAVLESRVLDSEKQKTKNFPIVDKVDKNGDIYEIGLHAFNQNDASIHIQPGCCLKCGSYCDLDSSRAAVNKALICIKRLQDAILSREISNTSISNALRSLHLLRSNLHAYNKLIAEAEDNLAQAFCLVGELQLSVDRCKASIQVKLILISILSYRLACFCHSAKAKTNTWGEVCFLHIFYLLVSLCVYLGLISCQMPFSSGRNINNC. 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02182 778 Pfam SET domain 225 522 IPR001214 GO:0005515
Seca4g02182 778 Gene3D Tetratricopeptide repeat domain 38 202 IPR011990 GO:0005515
Seca4g02182 778 Gene3D SET domain 421 521 IPR046341 -
Seca4g02182 778 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 715 - -
Seca4g02182 778 ProSiteProfiles SET domain profile. 212 522 IPR001214 GO:0005515
Seca4g02182 778 Coils Coil 671 691 - -
Seca4g02182 778 SUPERFAMILY SET domain 208 552 IPR046341 -
Seca4g02182 778 Gene3D Tetratricopeptide repeat domain 527 725 IPR011990 GO:0005515
Seca4g02182 778 SUPERFAMILY TPR-like 58 166 IPR011990 GO:0005515
Seca4g02182 778 SMART tpr_5 140 173 IPR019734 GO:0005515
Seca4g02182 778 SMART tpr_5 106 139 IPR019734 GO:0005515
Seca4g02182 778 SMART tpr_5 63 96 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02182 Seca-Chr4 36963413 36978375 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca4g02182 SET 3.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02182 K24634 - gmx:100783548 1157.9