Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02171 ATGGGGAGGAGACCTGCAAGGTGTTATCGGCAGATAAAAAATAAGCCATATCCCAAATCACGCTTCTGCCGTGGTGTTCCTGATCCCAAGATCAGAATTTATGATGTTGGTATGAAGAAAAAAGGTGTTGACGAGTTTCCTTTCTGCGTCCATCTGGTTAGTTGGGAGAAGGAAAATGTTTCAAGTGAGGCATTGGAAGCTGCTAGGATTGCATGCAACAAATATATGGCTAAATTTGCTGGAAAGGATGCTTTCCACTTGAGAGTAAGAGTACATCCGTTCCATGTTCTTAGGATCAACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACTGGGATGAGAGGTGCGTTTGGAAAGCCACAGGGCACATGTGCTAGAGTGGCCATTGGTCAGGTCCTTCTTTCTGTCCGCTGTAAGGACAGCAACAGCCATCATGCACAGGAAGCCCTACGTCGTGCTAAGTTTAAGTTCCCTGGTCGTCAAAAGATCATAGTTAGTAGGAAATGGGGTTTCACCAAGTTTAGTCGTACTGATTATCTCAAGTTCAAGTCAGAGAACAGAATTGTCCCTGATGGTGTGAATGCAAAGGTAAATGTGAAGCTGCATCATATTTTAAATTTTATGGCTGTCATACGTTTTTTTCATTTCTTTCTTCCATTTTGA 669 0.429 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKFKSENRIVPDGVNAKVNVKLHHILNFMAVIRFFHFFLPF. 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02171 222 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Seca4g02171 222 NCBIfam 50S ribosomal protein L16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Seca4g02171 222 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Seca4g02171 222 Gene3D Ribosomal protein L10e/L16 1 216 IPR036920 GO:0003735|GO:0005840|GO:0006412
Seca4g02171 222 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
Seca4g02171 222 FunFam 60S ribosomal protein L10 1 206 - -
Seca4g02171 222 PANTHER 60S RIBOSOMAL PROTEIN L10 1 201 IPR001197 GO:0003735|GO:0005840|GO:0006412
Seca4g02171 222 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Seca4g02171 222 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02171 Seca-Chr4 36869361 36871221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02171 1 198 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 89.394 5.29e-133 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02171 K02866 - gmx:100305619 410.609